Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4672

Experiment: m.b. Nickel (II) chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4671 and Echvi_4672 are separated by 3 nucleotidesEchvi_4672 and Echvi_4673 are separated by 306 nucleotides Echvi_4671: Echvi_4671 - RIP metalloprotease RseP, at 5,591,910 to 5,593,229 _4671 Echvi_4672: Echvi_4672 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase, at 5,593,233 to 5,594,399 _4672 Echvi_4673: Echvi_4673 - Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain, at 5,594,706 to 5,596,166 _4673 Position (kb) 5593 5594 5595Strain fitness (log2 ratio) -2 -1 0 1at 5593.230 kb on - strandat 5593.232 kb on - strandat 5593.235 kb on - strandat 5594.570 kb on - strandat 5594.690 kb on + strandat 5594.690 kb on + strandat 5594.690 kb on + strandat 5594.690 kb on + strandat 5594.691 kb on - strandat 5594.692 kb on + strandat 5594.692 kb on + strandat 5594.692 kb on + strandat 5594.698 kb on + strandat 5594.698 kb on + strandat 5594.698 kb on + strandat 5594.698 kb on + strandat 5594.723 kb on + strandat 5594.723 kb on + strandat 5594.724 kb on - strandat 5594.724 kb on - strandat 5594.770 kb on - strandat 5594.770 kb on - strandat 5594.986 kb on - strand, within Echvi_4673at 5594.992 kb on + strand, within Echvi_4673at 5595.000 kb on + strand, within Echvi_4673at 5595.076 kb on - strand, within Echvi_4673at 5595.100 kb on + strand, within Echvi_4673at 5595.100 kb on + strand, within Echvi_4673at 5595.144 kb on + strand, within Echvi_4673at 5595.146 kb on + strand, within Echvi_4673at 5595.146 kb on + strand, within Echvi_4673at 5595.177 kb on - strand, within Echvi_4673at 5595.177 kb on - strand, within Echvi_4673at 5595.288 kb on - strand, within Echvi_4673at 5595.293 kb on + strand, within Echvi_4673at 5595.293 kb on + strand, within Echvi_4673at 5595.293 kb on + strand, within Echvi_4673at 5595.294 kb on - strand, within Echvi_4673

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 0.5 mM
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5,593,230 - +1.0
5,593,232 - +0.1
5,593,235 - -0.1
5,594,570 - +1.1
5,594,690 + +0.3
5,594,690 + +1.2
5,594,690 + -1.8
5,594,690 + +1.1
5,594,691 - +0.7
5,594,692 + -0.6
5,594,692 + +0.3
5,594,692 + -0.2
5,594,698 + -0.1
5,594,698 + -0.8
5,594,698 + -0.7
5,594,698 + -0.1
5,594,723 + +0.2
5,594,723 + +0.5
5,594,724 - -1.6
5,594,724 - -0.7
5,594,770 - +0.5
5,594,770 - +0.2
5,594,986 - Echvi_4673 0.19 +0.8
5,594,992 + Echvi_4673 0.20 -0.3
5,595,000 + Echvi_4673 0.20 -0.2
5,595,076 - Echvi_4673 0.25 +0.2
5,595,100 + Echvi_4673 0.27 +0.1
5,595,100 + Echvi_4673 0.27 +1.0
5,595,144 + Echvi_4673 0.30 -0.9
5,595,146 + Echvi_4673 0.30 -0.8
5,595,146 + Echvi_4673 0.30 +0.5
5,595,177 - Echvi_4673 0.32 -1.9
5,595,177 - Echvi_4673 0.32 +1.2
5,595,288 - Echvi_4673 0.40 +0.4
5,595,293 + Echvi_4673 0.40 +0.6
5,595,293 + Echvi_4673 0.40 -0.5
5,595,293 + Echvi_4673 0.40 -0.5
5,595,294 - Echvi_4673 0.40 +0.1

Or see this region's nucleotide sequence