Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4671

Experiment: m.b. Nickel (II) chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4670 and Echvi_4671 are separated by 228 nucleotidesEchvi_4671 and Echvi_4672 are separated by 3 nucleotides Echvi_4670: Echvi_4670 - ATP-dependent protease La, at 5,589,198 to 5,591,681 _4670 Echvi_4671: Echvi_4671 - RIP metalloprotease RseP, at 5,591,910 to 5,593,229 _4671 Echvi_4672: Echvi_4672 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase, at 5,593,233 to 5,594,399 _4672 Position (kb) 5591 5592 5593 5594Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5590.979 kb on + strand, within Echvi_4670at 5590.979 kb on + strand, within Echvi_4670at 5590.979 kb on + strand, within Echvi_4670at 5590.980 kb on - strand, within Echvi_4670at 5590.980 kb on - strand, within Echvi_4670at 5590.981 kb on + strand, within Echvi_4670at 5590.981 kb on + strand, within Echvi_4670at 5590.982 kb on - strand, within Echvi_4670at 5591.047 kb on - strand, within Echvi_4670at 5591.102 kb on + strand, within Echvi_4670at 5591.103 kb on - strand, within Echvi_4670at 5591.146 kb on - strand, within Echvi_4670at 5591.146 kb on - strand, within Echvi_4670at 5591.233 kb on + strand, within Echvi_4670at 5591.234 kb on - strand, within Echvi_4670at 5591.234 kb on - strand, within Echvi_4670at 5591.309 kb on + strand, within Echvi_4670at 5591.315 kb on + strand, within Echvi_4670at 5591.316 kb on - strand, within Echvi_4670at 5591.318 kb on + strand, within Echvi_4670at 5591.319 kb on - strand, within Echvi_4670at 5591.319 kb on - strand, within Echvi_4670at 5591.319 kb on - strand, within Echvi_4670at 5591.374 kb on + strand, within Echvi_4670at 5591.374 kb on + strand, within Echvi_4670at 5591.374 kb on + strand, within Echvi_4670at 5591.374 kb on + strand, within Echvi_4670at 5591.374 kb on + strand, within Echvi_4670at 5591.374 kb on + strand, within Echvi_4670at 5591.374 kb on + strand, within Echvi_4670at 5591.375 kb on - strand, within Echvi_4670at 5591.378 kb on + strand, within Echvi_4670at 5591.379 kb on - strand, within Echvi_4670at 5591.379 kb on - strand, within Echvi_4670at 5591.549 kb on + strandat 5591.550 kb on - strandat 5591.611 kb on - strandat 5591.656 kb on + strandat 5591.657 kb on - strandat 5591.657 kb on - strandat 5591.659 kb on - strandat 5591.659 kb on - strandat 5591.659 kb on - strandat 5591.659 kb on - strandat 5591.683 kb on + strandat 5591.684 kb on - strandat 5591.684 kb on - strandat 5591.684 kb on - strandat 5591.685 kb on + strandat 5591.686 kb on - strandat 5591.686 kb on - strandat 5591.709 kb on + strandat 5591.725 kb on - strandat 5591.727 kb on - strandat 5591.755 kb on + strandat 5591.755 kb on + strandat 5591.755 kb on + strandat 5591.755 kb on + strandat 5591.755 kb on + strandat 5591.755 kb on + strandat 5591.755 kb on + strandat 5591.755 kb on + strandat 5591.828 kb on + strandat 5591.890 kb on - strandat 5593.230 kb on - strandat 5593.232 kb on - strandat 5593.235 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 0.5 mM
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5,590,979 + Echvi_4670 0.72 -0.8
5,590,979 + Echvi_4670 0.72 -1.3
5,590,979 + Echvi_4670 0.72 +0.6
5,590,980 - Echvi_4670 0.72 -1.1
5,590,980 - Echvi_4670 0.72 +2.0
5,590,981 + Echvi_4670 0.72 -0.2
5,590,981 + Echvi_4670 0.72 +0.8
5,590,982 - Echvi_4670 0.72 +0.0
5,591,047 - Echvi_4670 0.74 +0.6
5,591,102 + Echvi_4670 0.77 +0.9
5,591,103 - Echvi_4670 0.77 +0.5
5,591,146 - Echvi_4670 0.78 +0.8
5,591,146 - Echvi_4670 0.78 +1.1
5,591,233 + Echvi_4670 0.82 +1.2
5,591,234 - Echvi_4670 0.82 -0.4
5,591,234 - Echvi_4670 0.82 -0.4
5,591,309 + Echvi_4670 0.85 -1.7
5,591,315 + Echvi_4670 0.85 -0.4
5,591,316 - Echvi_4670 0.85 +0.3
5,591,318 + Echvi_4670 0.85 -0.3
5,591,319 - Echvi_4670 0.85 +0.5
5,591,319 - Echvi_4670 0.85 -1.3
5,591,319 - Echvi_4670 0.85 -0.3
5,591,374 + Echvi_4670 0.88 +1.0
5,591,374 + Echvi_4670 0.88 +0.7
5,591,374 + Echvi_4670 0.88 +0.4
5,591,374 + Echvi_4670 0.88 -0.8
5,591,374 + Echvi_4670 0.88 -0.4
5,591,374 + Echvi_4670 0.88 -0.2
5,591,374 + Echvi_4670 0.88 -2.8
5,591,375 - Echvi_4670 0.88 -0.1
5,591,378 + Echvi_4670 0.88 +1.8
5,591,379 - Echvi_4670 0.88 +0.3
5,591,379 - Echvi_4670 0.88 +0.4
5,591,549 + -0.3
5,591,550 - +0.3
5,591,611 - +1.5
5,591,656 + -0.2
5,591,657 - -0.9
5,591,657 - -2.9
5,591,659 - -0.5
5,591,659 - +0.1
5,591,659 - +0.2
5,591,659 - -0.3
5,591,683 + +1.7
5,591,684 - -0.3
5,591,684 - -0.6
5,591,684 - -1.1
5,591,685 + -0.5
5,591,686 - +0.0
5,591,686 - -0.7
5,591,709 + -0.7
5,591,725 - +0.9
5,591,727 - -1.3
5,591,755 + -0.3
5,591,755 + +0.8
5,591,755 + -0.1
5,591,755 + +0.5
5,591,755 + +0.0
5,591,755 + +0.3
5,591,755 + +0.3
5,591,755 + +1.6
5,591,828 + -0.4
5,591,890 - -0.4
5,593,230 - +1.0
5,593,232 - +0.1
5,593,235 - -0.1

Or see this region's nucleotide sequence