Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4635

Experiment: m.b. Nickel (II) chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4633 and Echvi_4634 are separated by 80 nucleotidesEchvi_4634 and Echvi_4635 are separated by 2 nucleotidesEchvi_4635 and Echvi_4636 are separated by 515 nucleotides Echvi_4633: Echvi_4633 - trigger factor, at 5,542,953 to 5,544,281 _4633 Echvi_4634: Echvi_4634 - Protease subunit of ATP-dependent Clp proteases, at 5,544,362 to 5,545,033 _4634 Echvi_4635: Echvi_4635 - endopeptidase Clp ATP-binding regulatory subunit (clpX), at 5,545,036 to 5,546,259 _4635 Echvi_4636: Echvi_4636 - lipid-A-disaccharide synthase, at 5,546,775 to 5,547,890 _4636 Position (kb) 5545 5546 5547Strain fitness (log2 ratio) -2 -1 0 1at 5544.092 kb on - strand, within Echvi_4633at 5544.135 kb on + strand, within Echvi_4633at 5544.140 kb on - strand, within Echvi_4633at 5544.147 kb on - strand, within Echvi_4633at 5544.261 kb on - strandat 5544.279 kb on + strandat 5546.357 kb on + strandat 5546.376 kb on + strandat 5546.377 kb on - strandat 5546.377 kb on - strandat 5546.377 kb on - strandat 5546.424 kb on + strandat 5546.424 kb on + strandat 5546.425 kb on - strandat 5546.425 kb on - strandat 5546.427 kb on - strandat 5546.432 kb on + strandat 5546.432 kb on + strandat 5546.432 kb on + strandat 5546.449 kb on + strandat 5546.449 kb on + strandat 5546.449 kb on + strandat 5546.451 kb on + strandat 5546.451 kb on + strandat 5546.451 kb on + strandat 5546.451 kb on + strandat 5546.451 kb on + strandat 5546.452 kb on - strandat 5546.452 kb on - strandat 5546.452 kb on - strandat 5546.452 kb on - strandat 5546.489 kb on + strandat 5546.494 kb on - strandat 5546.530 kb on + strandat 5546.561 kb on + strandat 5546.561 kb on + strandat 5546.562 kb on - strandat 5546.581 kb on + strandat 5546.617 kb on + strandat 5546.650 kb on + strandat 5546.651 kb on - strandat 5546.651 kb on - strandat 5546.711 kb on + strandat 5546.712 kb on - strandat 5546.712 kb on - strandat 5546.712 kb on - strandat 5546.713 kb on + strandat 5546.713 kb on + strandat 5546.714 kb on - strandat 5546.776 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 0.5 mM
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5,544,092 - Echvi_4633 0.86 -0.4
5,544,135 + Echvi_4633 0.89 -0.5
5,544,140 - Echvi_4633 0.89 -0.4
5,544,147 - Echvi_4633 0.90 -1.4
5,544,261 - +0.2
5,544,279 + -0.5
5,546,357 + -0.6
5,546,376 + +0.0
5,546,377 - +0.3
5,546,377 - +1.2
5,546,377 - -1.0
5,546,424 + -0.0
5,546,424 + +0.3
5,546,425 - -0.9
5,546,425 - -0.2
5,546,427 - -0.4
5,546,432 + -1.1
5,546,432 + -2.1
5,546,432 + +0.2
5,546,449 + -0.2
5,546,449 + -0.0
5,546,449 + +0.1
5,546,451 + -0.7
5,546,451 + +0.2
5,546,451 + +0.1
5,546,451 + -0.6
5,546,451 + -1.8
5,546,452 - +0.6
5,546,452 - +0.7
5,546,452 - -1.6
5,546,452 - +0.5
5,546,489 + -0.4
5,546,494 - +0.7
5,546,530 + +0.8
5,546,561 + +0.0
5,546,561 + -0.7
5,546,562 - -0.5
5,546,581 + +0.4
5,546,617 + +0.7
5,546,650 + +0.0
5,546,651 - -1.8
5,546,651 - +0.6
5,546,711 + -1.7
5,546,712 - -0.5
5,546,712 - -0.2
5,546,712 - -1.1
5,546,713 + -0.3
5,546,713 + -0.2
5,546,714 - -0.7
5,546,776 + -0.3

Or see this region's nucleotide sequence