Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4571

Experiment: m.b. Nickel (II) chloride 0.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_4570 and Echvi_4571 are separated by 434 nucleotidesEchvi_4571 and Echvi_4572 are separated by 23 nucleotides Echvi_4570: Echvi_4570 - Peroxiredoxin, at 5,473,043 to 5,474,152 _4570 Echvi_4571: Echvi_4571 - hypothetical protein, at 5,474,587 to 5,474,712 _4571 Echvi_4572: Echvi_4572 - PAS domain S-box, at 5,474,736 to 5,478,725 _4572 Position (kb) 5474 5475Strain fitness (log2 ratio) -2 -1 0 1 2at 5473.607 kb on + strand, within Echvi_4570at 5473.656 kb on - strand, within Echvi_4570at 5473.684 kb on + strand, within Echvi_4570at 5473.684 kb on + strand, within Echvi_4570at 5473.685 kb on - strand, within Echvi_4570at 5473.685 kb on - strand, within Echvi_4570at 5473.688 kb on + strand, within Echvi_4570at 5473.688 kb on + strand, within Echvi_4570at 5473.689 kb on - strand, within Echvi_4570at 5473.689 kb on - strand, within Echvi_4570at 5473.818 kb on + strand, within Echvi_4570at 5473.843 kb on - strand, within Echvi_4570at 5473.943 kb on + strand, within Echvi_4570at 5473.943 kb on + strand, within Echvi_4570at 5473.943 kb on + strand, within Echvi_4570at 5473.943 kb on + strand, within Echvi_4570at 5473.943 kb on + strand, within Echvi_4570at 5473.943 kb on + strand, within Echvi_4570at 5473.943 kb on + strand, within Echvi_4570at 5473.944 kb on - strand, within Echvi_4570at 5473.944 kb on - strand, within Echvi_4570at 5473.946 kb on - strand, within Echvi_4570at 5474.045 kb on + strandat 5474.046 kb on - strandat 5474.046 kb on - strandat 5474.118 kb on - strandat 5474.130 kb on + strandat 5474.131 kb on - strandat 5474.271 kb on + strandat 5474.276 kb on + strandat 5474.277 kb on - strandat 5474.277 kb on - strandat 5474.281 kb on + strandat 5474.297 kb on - strandat 5474.301 kb on + strandat 5474.301 kb on + strandat 5474.301 kb on + strandat 5474.302 kb on - strandat 5474.302 kb on - strandat 5474.330 kb on - strandat 5474.360 kb on + strandat 5474.423 kb on + strandat 5474.423 kb on + strandat 5474.434 kb on + strandat 5474.521 kb on - strandat 5474.566 kb on + strandat 5474.571 kb on + strandat 5474.572 kb on - strandat 5474.572 kb on - strandat 5474.590 kb on + strandat 5474.591 kb on - strandat 5474.746 kb on + strandat 5474.746 kb on + strandat 5474.747 kb on - strandat 5474.747 kb on - strandat 5474.750 kb on + strandat 5474.751 kb on - strandat 5474.757 kb on - strandat 5474.774 kb on + strandat 5474.775 kb on - strandat 5474.818 kb on - strandat 5474.878 kb on + strandat 5474.957 kb on + strandat 5474.958 kb on - strandat 5474.999 kb on + strandat 5475.000 kb on - strandat 5475.062 kb on + strandat 5475.062 kb on + strandat 5475.100 kb on + strandat 5475.107 kb on + strandat 5475.131 kb on + strandat 5475.216 kb on + strand, within Echvi_4572at 5475.305 kb on + strand, within Echvi_4572at 5475.306 kb on - strand, within Echvi_4572at 5475.385 kb on - strand, within Echvi_4572at 5475.385 kb on - strand, within Echvi_4572at 5475.405 kb on + strand, within Echvi_4572at 5475.410 kb on + strand, within Echvi_4572at 5475.410 kb on + strand, within Echvi_4572at 5475.410 kb on + strand, within Echvi_4572at 5475.410 kb on + strand, within Echvi_4572at 5475.410 kb on + strand, within Echvi_4572at 5475.410 kb on + strand, within Echvi_4572at 5475.410 kb on + strand, within Echvi_4572at 5475.411 kb on - strand, within Echvi_4572at 5475.411 kb on - strand, within Echvi_4572at 5475.411 kb on - strand, within Echvi_4572at 5475.414 kb on + strand, within Echvi_4572at 5475.415 kb on - strand, within Echvi_4572at 5475.415 kb on - strand, within Echvi_4572at 5475.415 kb on - strand, within Echvi_4572at 5475.416 kb on + strand, within Echvi_4572at 5475.416 kb on + strand, within Echvi_4572at 5475.417 kb on - strand, within Echvi_4572at 5475.418 kb on + strand, within Echvi_4572at 5475.419 kb on - strand, within Echvi_4572at 5475.461 kb on + strand, within Echvi_4572at 5475.491 kb on + strand, within Echvi_4572at 5475.491 kb on + strand, within Echvi_4572at 5475.491 kb on + strand, within Echvi_4572at 5475.491 kb on + strand, within Echvi_4572at 5475.492 kb on - strand, within Echvi_4572at 5475.492 kb on - strand, within Echvi_4572at 5475.492 kb on - strand, within Echvi_4572at 5475.492 kb on - strand, within Echvi_4572at 5475.492 kb on - strand, within Echvi_4572at 5475.497 kb on + strand, within Echvi_4572at 5475.497 kb on + strand, within Echvi_4572at 5475.497 kb on + strand, within Echvi_4572at 5475.497 kb on + strand, within Echvi_4572at 5475.497 kb on + strand, within Echvi_4572at 5475.497 kb on + strand, within Echvi_4572at 5475.497 kb on + strand, within Echvi_4572at 5475.498 kb on - strand, within Echvi_4572at 5475.498 kb on - strand, within Echvi_4572at 5475.498 kb on - strand, within Echvi_4572at 5475.499 kb on + strand, within Echvi_4572at 5475.499 kb on + strand, within Echvi_4572at 5475.499 kb on + strand, within Echvi_4572at 5475.500 kb on - strand, within Echvi_4572at 5475.500 kb on - strand, within Echvi_4572at 5475.500 kb on - strand, within Echvi_4572at 5475.529 kb on - strand, within Echvi_4572at 5475.529 kb on - strand, within Echvi_4572at 5475.529 kb on - strand, within Echvi_4572at 5475.582 kb on + strand, within Echvi_4572at 5475.583 kb on - strand, within Echvi_4572at 5475.667 kb on + strand, within Echvi_4572at 5475.667 kb on + strand, within Echvi_4572at 5475.667 kb on + strand, within Echvi_4572at 5475.669 kb on + strand, within Echvi_4572at 5475.704 kb on - strand, within Echvi_4572

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 0.5 mM
remove
5,473,607 + Echvi_4570 0.51 +0.0
5,473,656 - Echvi_4570 0.55 -0.1
5,473,684 + Echvi_4570 0.58 -0.7
5,473,684 + Echvi_4570 0.58 +0.4
5,473,685 - Echvi_4570 0.58 -0.5
5,473,685 - Echvi_4570 0.58 -0.1
5,473,688 + Echvi_4570 0.58 -0.2
5,473,688 + Echvi_4570 0.58 +0.2
5,473,689 - Echvi_4570 0.58 -0.8
5,473,689 - Echvi_4570 0.58 -0.5
5,473,818 + Echvi_4570 0.70 +1.5
5,473,843 - Echvi_4570 0.72 -1.1
5,473,943 + Echvi_4570 0.81 +0.2
5,473,943 + Echvi_4570 0.81 -0.1
5,473,943 + Echvi_4570 0.81 -0.7
5,473,943 + Echvi_4570 0.81 +1.5
5,473,943 + Echvi_4570 0.81 -0.7
5,473,943 + Echvi_4570 0.81 -0.8
5,473,943 + Echvi_4570 0.81 +0.2
5,473,944 - Echvi_4570 0.81 +1.2
5,473,944 - Echvi_4570 0.81 -0.5
5,473,946 - Echvi_4570 0.81 -0.0
5,474,045 + +0.2
5,474,046 - -0.2
5,474,046 - +1.0
5,474,118 - -0.2
5,474,130 + -0.5
5,474,131 - +1.1
5,474,271 + -0.6
5,474,276 + -0.2
5,474,277 - +0.4
5,474,277 - -0.4
5,474,281 + -0.9
5,474,297 - +0.1
5,474,301 + +0.9
5,474,301 + +1.1
5,474,301 + +0.2
5,474,302 - -0.5
5,474,302 - +0.3
5,474,330 - -0.5
5,474,360 + +0.2
5,474,423 + +1.2
5,474,423 + +0.2
5,474,434 + +0.3
5,474,521 - +0.1
5,474,566 + +1.1
5,474,571 + +0.8
5,474,572 - -0.3
5,474,572 - +0.2
5,474,590 + +0.4
5,474,591 - -0.8
5,474,746 + +0.1
5,474,746 + -0.8
5,474,747 - +0.5
5,474,747 - -0.1
5,474,750 + -0.2
5,474,751 - +0.4
5,474,757 - -0.2
5,474,774 + -1.5
5,474,775 - +0.3
5,474,818 - -0.2
5,474,878 + -0.7
5,474,957 + +2.2
5,474,958 - -0.1
5,474,999 + -0.6
5,475,000 - -0.8
5,475,062 + -0.2
5,475,062 + -1.2
5,475,100 + +0.2
5,475,107 + -1.3
5,475,131 + -0.4
5,475,216 + Echvi_4572 0.12 -1.0
5,475,305 + Echvi_4572 0.14 +0.1
5,475,306 - Echvi_4572 0.14 +0.3
5,475,385 - Echvi_4572 0.16 +1.2
5,475,385 - Echvi_4572 0.16 -1.2
5,475,405 + Echvi_4572 0.17 +0.9
5,475,410 + Echvi_4572 0.17 +0.6
5,475,410 + Echvi_4572 0.17 +0.8
5,475,410 + Echvi_4572 0.17 +0.1
5,475,410 + Echvi_4572 0.17 -0.4
5,475,410 + Echvi_4572 0.17 -0.0
5,475,410 + Echvi_4572 0.17 -0.3
5,475,410 + Echvi_4572 0.17 -1.6
5,475,411 - Echvi_4572 0.17 -1.2
5,475,411 - Echvi_4572 0.17 -0.1
5,475,411 - Echvi_4572 0.17 +0.9
5,475,414 + Echvi_4572 0.17 +0.1
5,475,415 - Echvi_4572 0.17 +0.2
5,475,415 - Echvi_4572 0.17 -1.2
5,475,415 - Echvi_4572 0.17 -0.1
5,475,416 + Echvi_4572 0.17 +2.5
5,475,416 + Echvi_4572 0.17 +0.1
5,475,417 - Echvi_4572 0.17 -0.7
5,475,418 + Echvi_4572 0.17 -0.1
5,475,419 - Echvi_4572 0.17 -0.9
5,475,461 + Echvi_4572 0.18 -0.1
5,475,491 + Echvi_4572 0.19 +1.1
5,475,491 + Echvi_4572 0.19 -0.2
5,475,491 + Echvi_4572 0.19 -1.9
5,475,491 + Echvi_4572 0.19 -0.8
5,475,492 - Echvi_4572 0.19 +1.6
5,475,492 - Echvi_4572 0.19 -2.5
5,475,492 - Echvi_4572 0.19 -0.7
5,475,492 - Echvi_4572 0.19 -0.6
5,475,492 - Echvi_4572 0.19 +0.3
5,475,497 + Echvi_4572 0.19 +0.3
5,475,497 + Echvi_4572 0.19 -1.2
5,475,497 + Echvi_4572 0.19 +0.9
5,475,497 + Echvi_4572 0.19 +0.9
5,475,497 + Echvi_4572 0.19 -1.5
5,475,497 + Echvi_4572 0.19 +0.9
5,475,497 + Echvi_4572 0.19 +1.2
5,475,498 - Echvi_4572 0.19 -0.8
5,475,498 - Echvi_4572 0.19 -2.2
5,475,498 - Echvi_4572 0.19 -0.3
5,475,499 + Echvi_4572 0.19 -0.7
5,475,499 + Echvi_4572 0.19 -0.5
5,475,499 + Echvi_4572 0.19 +0.0
5,475,500 - Echvi_4572 0.19 -1.5
5,475,500 - Echvi_4572 0.19 -0.2
5,475,500 - Echvi_4572 0.19 +0.1
5,475,529 - Echvi_4572 0.20 -0.9
5,475,529 - Echvi_4572 0.20 +0.4
5,475,529 - Echvi_4572 0.20 -0.7
5,475,582 + Echvi_4572 0.21 +1.5
5,475,583 - Echvi_4572 0.21 -0.7
5,475,667 + Echvi_4572 0.23 +1.2
5,475,667 + Echvi_4572 0.23 +0.6
5,475,667 + Echvi_4572 0.23 +1.0
5,475,669 + Echvi_4572 0.23 -0.9
5,475,704 - Echvi_4572 0.24 +0.3

Or see this region's nucleotide sequence