Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3720

Experiment: m.b. Nickel (II) chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_3718 and Echvi_3719 are separated by 4 nucleotidesEchvi_3719 and Echvi_3720 are separated by 249 nucleotidesEchvi_3720 and Echvi_3721 are separated by 134 nucleotidesEchvi_3721 and Echvi_3722 are separated by 140 nucleotides Echvi_3718: Echvi_3718 - Coproporphyrinogen III oxidase, at 4,424,598 to 4,425,506 _3718 Echvi_3719: Echvi_3719 - Membrane-associated phospholipid phosphatase, at 4,425,511 to 4,426,098 _3719 Echvi_3720: Echvi_3720 - riboflavin synthase, alpha subunit, at 4,426,348 to 4,426,935 _3720 Echvi_3721: Echvi_3721 - protein-L-isoaspartate(D-aspartate) O-methyltransferase, at 4,427,070 to 4,427,723 _3721 Echvi_3722: Echvi_3722 - Acyl-CoA hydrolase, at 4,427,864 to 4,428,406 _3722 Position (kb) 4426 4427Strain fitness (log2 ratio) -1 0 1 2at 4425.504 kb on + strandat 4425.516 kb on - strandat 4426.130 kb on + strandat 4426.160 kb on - strandat 4426.164 kb on - strandat 4426.164 kb on - strandat 4426.164 kb on - strandat 4426.164 kb on - strandat 4426.164 kb on - strandat 4426.176 kb on + strandat 4426.176 kb on + strandat 4426.177 kb on - strandat 4426.187 kb on + strandat 4426.188 kb on - strandat 4426.207 kb on - strandat 4426.220 kb on + strandat 4426.220 kb on + strandat 4426.221 kb on - strandat 4426.224 kb on + strandat 4426.224 kb on + strandat 4426.225 kb on - strandat 4426.234 kb on + strandat 4426.242 kb on - strandat 4426.242 kb on - strandat 4426.274 kb on + strandat 4426.275 kb on - strandat 4426.275 kb on - strandat 4426.292 kb on + strandat 4426.293 kb on - strandat 4427.004 kb on - strandat 4427.063 kb on + strandat 4427.063 kb on + strandat 4427.064 kb on - strandat 4427.087 kb on + strandat 4427.091 kb on + strandat 4427.091 kb on + strandat 4427.091 kb on + strandat 4427.091 kb on + strandat 4427.092 kb on - strandat 4427.092 kb on - strandat 4427.092 kb on - strandat 4427.122 kb on + strandat 4427.226 kb on + strand, within Echvi_3721at 4427.227 kb on - strand, within Echvi_3721at 4427.227 kb on - strand, within Echvi_3721at 4427.279 kb on + strand, within Echvi_3721at 4427.374 kb on - strand, within Echvi_3721at 4427.377 kb on + strand, within Echvi_3721at 4427.377 kb on + strand, within Echvi_3721at 4427.392 kb on + strand, within Echvi_3721at 4427.393 kb on - strand, within Echvi_3721at 4427.393 kb on - strand, within Echvi_3721at 4427.472 kb on + strand, within Echvi_3721at 4427.616 kb on - strand, within Echvi_3721at 4427.677 kb on - strandat 4427.681 kb on + strandat 4427.681 kb on + strandat 4427.744 kb on - strandat 4427.744 kb on - strandat 4427.744 kb on - strandat 4427.898 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 0.5 mM
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4,425,504 + -0.2
4,425,516 - -0.9
4,426,130 + +0.4
4,426,160 - +2.3
4,426,164 - -0.0
4,426,164 - -0.6
4,426,164 - -0.3
4,426,164 - -0.5
4,426,164 - -1.0
4,426,176 + +0.0
4,426,176 + -0.6
4,426,177 - +0.5
4,426,187 + -0.0
4,426,188 - -0.2
4,426,207 - +0.0
4,426,220 + -0.7
4,426,220 + +0.8
4,426,221 - -0.2
4,426,224 + -0.0
4,426,224 + +0.8
4,426,225 - -0.0
4,426,234 + +0.3
4,426,242 - +0.7
4,426,242 - -0.2
4,426,274 + -1.7
4,426,275 - +1.4
4,426,275 - -1.2
4,426,292 + +0.5
4,426,293 - +0.7
4,427,004 - +0.4
4,427,063 + +0.2
4,427,063 + -0.3
4,427,064 - -0.3
4,427,087 + -0.5
4,427,091 + -0.6
4,427,091 + +1.4
4,427,091 + -0.7
4,427,091 + +0.2
4,427,092 - +0.4
4,427,092 - -0.5
4,427,092 - +1.3
4,427,122 + -0.2
4,427,226 + Echvi_3721 0.24 -0.9
4,427,227 - Echvi_3721 0.24 -0.8
4,427,227 - Echvi_3721 0.24 -0.4
4,427,279 + Echvi_3721 0.32 -0.9
4,427,374 - Echvi_3721 0.46 +0.3
4,427,377 + Echvi_3721 0.47 -0.4
4,427,377 + Echvi_3721 0.47 -0.5
4,427,392 + Echvi_3721 0.49 -0.4
4,427,393 - Echvi_3721 0.49 -0.9
4,427,393 - Echvi_3721 0.49 +0.1
4,427,472 + Echvi_3721 0.61 -0.9
4,427,616 - Echvi_3721 0.83 +0.3
4,427,677 - +0.4
4,427,681 + -0.6
4,427,681 + -1.0
4,427,744 - +1.3
4,427,744 - +0.3
4,427,744 - +0.4
4,427,898 + -1.1

Or see this region's nucleotide sequence