Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3436

Experiment: m.b. Nickel (II) chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_3434 and Echvi_3435 are separated by 81 nucleotidesEchvi_3435 and Echvi_3436 are separated by 108 nucleotidesEchvi_3436 and Echvi_3437 are separated by 83 nucleotides Echvi_3434: Echvi_3434 - Predicted permeases, at 4,062,792 to 4,064,603 _3434 Echvi_3435: Echvi_3435 - ribosomal protein S15, bacterial/organelle, at 4,064,685 to 4,064,960 _3435 Echvi_3436: Echvi_3436 - polyribonucleotide nucleotidyltransferase, at 4,065,069 to 4,067,210 _3436 Echvi_3437: Echvi_3437 - RNA polymerase sigma factor, sigma-70 family, at 4,067,294 to 4,068,157 _3437 Position (kb) 4065 4066 4067 4068Strain fitness (log2 ratio) -1 0 1at 4064.544 kb on + strandat 4064.544 kb on + strandat 4064.544 kb on + strandat 4064.584 kb on + strandat 4065.026 kb on + strandat 4066.968 kb on + strand, within Echvi_3436at 4067.259 kb on + strandat 4067.261 kb on + strandat 4067.261 kb on + strandat 4067.265 kb on + strandat 4068.206 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 0.5 mM
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4,064,544 + +0.3
4,064,544 + -0.1
4,064,544 + -0.0
4,064,584 + -0.2
4,065,026 + +0.1
4,066,968 + Echvi_3436 0.89 -1.1
4,067,259 + +0.7
4,067,261 + +0.3
4,067,261 + +0.4
4,067,265 + -1.2
4,068,206 - +0.4

Or see this region's nucleotide sequence