Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2467

Experiment: m.b. Nickel (II) chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2465 and Echvi_2466 are separated by 109 nucleotidesEchvi_2466 and Echvi_2467 are separated by 2 nucleotidesEchvi_2467 and Echvi_2468 are separated by 63 nucleotides Echvi_2465: Echvi_2465 - 1,4-dihydroxy-2-naphthoate octaprenyltransferase, at 2,924,687 to 2,925,601 _2465 Echvi_2466: Echvi_2466 - Glutathione peroxidase, at 2,925,711 to 2,926,307 _2466 Echvi_2467: Echvi_2467 - arginyl-tRNA synthetase, at 2,926,310 to 2,928,100 _2467 Echvi_2468: Echvi_2468 - Arginase/agmatinase/formimionoglutamate hydrolase, arginase family, at 2,928,164 to 2,929,114 _2468 Position (kb) 2926 2927 2928 2929Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2925.619 kb on - strandat 2925.636 kb on - strandat 2925.638 kb on - strandat 2925.800 kb on - strand, within Echvi_2466at 2925.800 kb on - strand, within Echvi_2466at 2925.803 kb on - strand, within Echvi_2466at 2925.822 kb on - strand, within Echvi_2466at 2925.935 kb on - strand, within Echvi_2466at 2926.064 kb on - strand, within Echvi_2466at 2926.093 kb on - strand, within Echvi_2466at 2926.175 kb on - strand, within Echvi_2466at 2926.297 kb on - strandat 2928.248 kb on - strandat 2928.248 kb on - strandat 2928.363 kb on - strand, within Echvi_2468at 2928.390 kb on - strand, within Echvi_2468at 2928.390 kb on - strand, within Echvi_2468at 2928.494 kb on - strand, within Echvi_2468at 2928.498 kb on - strand, within Echvi_2468at 2928.556 kb on - strand, within Echvi_2468at 2928.683 kb on - strand, within Echvi_2468at 2928.958 kb on - strand, within Echvi_2468at 2929.035 kb on - strandat 2929.095 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 0.5 mM
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2,925,619 - -1.3
2,925,636 - +0.9
2,925,638 - -0.9
2,925,800 - Echvi_2466 0.15 -0.6
2,925,800 - Echvi_2466 0.15 -0.3
2,925,803 - Echvi_2466 0.15 +2.8
2,925,822 - Echvi_2466 0.19 -0.2
2,925,935 - Echvi_2466 0.38 -0.7
2,926,064 - Echvi_2466 0.59 -0.9
2,926,093 - Echvi_2466 0.64 -0.5
2,926,175 - Echvi_2466 0.78 -1.4
2,926,297 - +0.5
2,928,248 - -0.5
2,928,248 - +0.1
2,928,363 - Echvi_2468 0.21 -0.0
2,928,390 - Echvi_2468 0.24 -0.7
2,928,390 - Echvi_2468 0.24 -0.2
2,928,494 - Echvi_2468 0.35 +0.4
2,928,498 - Echvi_2468 0.35 -1.4
2,928,556 - Echvi_2468 0.41 -1.7
2,928,683 - Echvi_2468 0.55 +1.0
2,928,958 - Echvi_2468 0.83 -2.4
2,929,035 - -0.0
2,929,095 - +0.6

Or see this region's nucleotide sequence