Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2429

Experiment: m.b. Nickel (II) chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2427 and Echvi_2428 are separated by 63 nucleotidesEchvi_2428 and Echvi_2429 are separated by 88 nucleotidesEchvi_2429 and Echvi_2430 are separated by 76 nucleotides Echvi_2427: Echvi_2427 - ATP-dependent metalloprotease FtsH, at 2,878,197 to 2,880,242 _2427 Echvi_2428: Echvi_2428 - iojap-like ribosome-associated protein, at 2,880,306 to 2,880,653 _2428 Echvi_2429: Echvi_2429 - birA, biotin-[acetyl-CoA-carboxylase] ligase region, at 2,880,742 to 2,881,500 _2429 Echvi_2430: Echvi_2430 - adenosylhomocysteinase, at 2,881,577 to 2,882,893 _2430 Position (kb) 2880 2881 2882Strain fitness (log2 ratio) -1 0 1 2at 2880.369 kb on - strand, within Echvi_2428at 2880.404 kb on - strand, within Echvi_2428at 2880.404 kb on - strand, within Echvi_2428at 2880.622 kb on - strandat 2880.633 kb on - strandat 2880.673 kb on - strandat 2880.704 kb on - strandat 2880.719 kb on - strandat 2880.729 kb on - strandat 2880.733 kb on - strandat 2880.790 kb on + strandat 2881.479 kb on + strandat 2881.510 kb on + strandat 2881.511 kb on - strandat 2881.536 kb on + strandat 2881.570 kb on + strandat 2881.574 kb on + strandat 2882.429 kb on - strand, within Echvi_2430

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 0.5 mM
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2,880,369 - Echvi_2428 0.18 +0.4
2,880,404 - Echvi_2428 0.28 -0.2
2,880,404 - Echvi_2428 0.28 +0.2
2,880,622 - +0.5
2,880,633 - -1.3
2,880,673 - -0.2
2,880,704 - +2.1
2,880,719 - +0.5
2,880,729 - -0.5
2,880,733 - -1.1
2,880,790 + +0.2
2,881,479 + +0.9
2,881,510 + +0.1
2,881,511 - -1.4
2,881,536 + -0.3
2,881,570 + -1.5
2,881,574 + +0.4
2,882,429 - Echvi_2430 0.65 -0.3

Or see this region's nucleotide sequence