Experiment: m.b. Nickel (II) chloride 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_2385 and Echvi_2386 are separated by 340 nucleotides Echvi_2386 and Echvi_2387 are separated by 45 nucleotides Echvi_2387 and Echvi_2388 overlap by 4 nucleotides Echvi_2388 and Echvi_2389 are separated by 436 nucleotides
Echvi_2385: Echvi_2385 - hypothetical protein, at 2,829,810 to 2,830,058
_2385
Echvi_2386: Echvi_2386 - ribosomal protein L9, at 2,830,399 to 2,830,842
_2386
Echvi_2387: Echvi_2387 - ribosomal protein S18, at 2,830,888 to 2,831,139
_2387
Echvi_2388: Echvi_2388 - ribosomal protein S6, at 2,831,136 to 2,831,507
_2388
Echvi_2389: Echvi_2389 - hypothetical protein, at 2,831,944 to 2,832,864
_2389
Position (kb)
2830
2831
2832 Strain fitness (log2 ratio)
-1
0
1 at 2830.016 kb on + strand, within Echvi_2385 at 2830.176 kb on + strand at 2830.204 kb on + strand at 2830.204 kb on + strand at 2830.204 kb on + strand at 2830.377 kb on + strand at 2830.453 kb on + strand, within Echvi_2386 at 2831.629 kb on - strand at 2831.631 kb on + strand at 2831.631 kb on + strand at 2831.631 kb on + strand at 2831.632 kb on - strand at 2831.632 kb on - strand at 2831.727 kb on - strand at 2831.783 kb on - strand at 2831.783 kb on - strand at 2831.801 kb on - strand at 2831.815 kb on - strand at 2831.822 kb on + strand at 2831.823 kb on - strand at 2831.922 kb on + strand at 2831.977 kb on - strand at 2831.977 kb on - strand at 2832.045 kb on - strand, within Echvi_2389 at 2832.071 kb on + strand, within Echvi_2389 at 2832.094 kb on - strand, within Echvi_2389 at 2832.095 kb on + strand, within Echvi_2389 at 2832.096 kb on - strand, within Echvi_2389
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 0.5 mM remove 2,830,016 + Echvi_2385 0.83 +0.4 2,830,176 + +1.0 2,830,204 + +0.4 2,830,204 + +1.6 2,830,204 + -0.1 2,830,377 + -0.9 2,830,453 + Echvi_2386 0.12 -0.7 2,831,629 - +0.3 2,831,631 + -0.3 2,831,631 + +1.5 2,831,631 + -1.0 2,831,632 - -0.5 2,831,632 - -0.3 2,831,727 - -1.4 2,831,783 - +0.7 2,831,783 - -0.6 2,831,801 - -0.3 2,831,815 - +0.1 2,831,822 + +0.4 2,831,823 - -0.7 2,831,922 + -1.0 2,831,977 - +0.8 2,831,977 - -0.2 2,832,045 - Echvi_2389 0.11 +0.4 2,832,071 + Echvi_2389 0.14 +0.1 2,832,094 - Echvi_2389 0.16 -0.1 2,832,095 + Echvi_2389 0.16 -1.3 2,832,096 - Echvi_2389 0.17 +1.0
Or see this region's nucleotide sequence