Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2387

Experiment: m.b. Nickel (II) chloride 0.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_2385 and Echvi_2386 are separated by 340 nucleotidesEchvi_2386 and Echvi_2387 are separated by 45 nucleotidesEchvi_2387 and Echvi_2388 overlap by 4 nucleotidesEchvi_2388 and Echvi_2389 are separated by 436 nucleotides Echvi_2385: Echvi_2385 - hypothetical protein, at 2,829,810 to 2,830,058 _2385 Echvi_2386: Echvi_2386 - ribosomal protein L9, at 2,830,399 to 2,830,842 _2386 Echvi_2387: Echvi_2387 - ribosomal protein S18, at 2,830,888 to 2,831,139 _2387 Echvi_2388: Echvi_2388 - ribosomal protein S6, at 2,831,136 to 2,831,507 _2388 Echvi_2389: Echvi_2389 - hypothetical protein, at 2,831,944 to 2,832,864 _2389 Position (kb) 2830 2831 2832Strain fitness (log2 ratio) -1 0 1at 2830.016 kb on + strand, within Echvi_2385at 2830.176 kb on + strandat 2830.204 kb on + strandat 2830.204 kb on + strandat 2830.204 kb on + strandat 2830.377 kb on + strandat 2830.453 kb on + strand, within Echvi_2386at 2831.629 kb on - strandat 2831.631 kb on + strandat 2831.631 kb on + strandat 2831.631 kb on + strandat 2831.632 kb on - strandat 2831.632 kb on - strandat 2831.727 kb on - strandat 2831.783 kb on - strandat 2831.783 kb on - strandat 2831.801 kb on - strandat 2831.815 kb on - strandat 2831.822 kb on + strandat 2831.823 kb on - strandat 2831.922 kb on + strandat 2831.977 kb on - strandat 2831.977 kb on - strandat 2832.045 kb on - strand, within Echvi_2389at 2832.071 kb on + strand, within Echvi_2389at 2832.094 kb on - strand, within Echvi_2389at 2832.095 kb on + strand, within Echvi_2389at 2832.096 kb on - strand, within Echvi_2389

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 0.5 mM
remove
2,830,016 + Echvi_2385 0.83 +0.4
2,830,176 + +1.0
2,830,204 + +0.4
2,830,204 + +1.6
2,830,204 + -0.1
2,830,377 + -0.9
2,830,453 + Echvi_2386 0.12 -0.7
2,831,629 - +0.3
2,831,631 + -0.3
2,831,631 + +1.5
2,831,631 + -1.0
2,831,632 - -0.5
2,831,632 - -0.3
2,831,727 - -1.4
2,831,783 - +0.7
2,831,783 - -0.6
2,831,801 - -0.3
2,831,815 - +0.1
2,831,822 + +0.4
2,831,823 - -0.7
2,831,922 + -1.0
2,831,977 - +0.8
2,831,977 - -0.2
2,832,045 - Echvi_2389 0.11 +0.4
2,832,071 + Echvi_2389 0.14 +0.1
2,832,094 - Echvi_2389 0.16 -0.1
2,832,095 + Echvi_2389 0.16 -1.3
2,832,096 - Echvi_2389 0.17 +1.0

Or see this region's nucleotide sequence