Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2345

Experiment: m.b. Nickel (II) chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2344 and Echvi_2345 are separated by 7 nucleotidesEchvi_2345 and Echvi_2346 overlap by 1 nucleotidesEchvi_2346 and Echvi_2347 are separated by 157 nucleotides Echvi_2344: Echvi_2344 - 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase, at 2,781,460 to 2,783,142 _2344 Echvi_2345: Echvi_2345 - isochorismate synthases, at 2,783,150 to 2,784,352 _2345 Echvi_2346: Echvi_2346 - uncharacterized domain 1, at 2,784,352 to 2,784,777 _2346 Echvi_2347: Echvi_2347 - Fructose-2,6-bisphosphatase, at 2,784,935 to 2,785,567 _2347 Position (kb) 2783 2784 2785Strain fitness (log2 ratio) -2 -1 0 1at 2784.305 kb on + strandat 2784.328 kb on - strandat 2784.535 kb on - strand, within Echvi_2346at 2784.540 kb on - strand, within Echvi_2346at 2784.557 kb on - strand, within Echvi_2346at 2784.715 kb on + strand, within Echvi_2346at 2784.845 kb on + strandat 2784.846 kb on - strandat 2784.943 kb on + strandat 2784.952 kb on - strandat 2784.981 kb on - strandat 2784.982 kb on + strandat 2784.983 kb on - strandat 2785.025 kb on - strand, within Echvi_2347at 2785.073 kb on - strand, within Echvi_2347at 2785.073 kb on - strand, within Echvi_2347at 2785.079 kb on - strand, within Echvi_2347at 2785.090 kb on + strand, within Echvi_2347at 2785.097 kb on + strand, within Echvi_2347at 2785.098 kb on - strand, within Echvi_2347at 2785.098 kb on - strand, within Echvi_2347at 2785.100 kb on + strand, within Echvi_2347at 2785.101 kb on - strand, within Echvi_2347at 2785.102 kb on + strand, within Echvi_2347at 2785.102 kb on + strand, within Echvi_2347at 2785.102 kb on + strand, within Echvi_2347at 2785.117 kb on + strand, within Echvi_2347at 2785.118 kb on - strand, within Echvi_2347at 2785.160 kb on + strand, within Echvi_2347at 2785.161 kb on - strand, within Echvi_2347at 2785.223 kb on - strand, within Echvi_2347at 2785.238 kb on + strand, within Echvi_2347at 2785.238 kb on + strand, within Echvi_2347at 2785.238 kb on + strand, within Echvi_2347at 2785.239 kb on - strand, within Echvi_2347at 2785.319 kb on + strand, within Echvi_2347at 2785.348 kb on + strand, within Echvi_2347at 2785.349 kb on - strand, within Echvi_2347at 2785.349 kb on - strand, within Echvi_2347

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 0.5 mM
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2,784,305 + +1.0
2,784,328 - -0.3
2,784,535 - Echvi_2346 0.43 -0.7
2,784,540 - Echvi_2346 0.44 -1.2
2,784,557 - Echvi_2346 0.48 -0.1
2,784,715 + Echvi_2346 0.85 -1.1
2,784,845 + +1.0
2,784,846 - +0.2
2,784,943 + -0.1
2,784,952 - -1.2
2,784,981 - +0.2
2,784,982 + -1.0
2,784,983 - +0.0
2,785,025 - Echvi_2347 0.14 -2.4
2,785,073 - Echvi_2347 0.22 -0.1
2,785,073 - Echvi_2347 0.22 -0.1
2,785,079 - Echvi_2347 0.23 -1.5
2,785,090 + Echvi_2347 0.24 -0.2
2,785,097 + Echvi_2347 0.26 -1.1
2,785,098 - Echvi_2347 0.26 -1.4
2,785,098 - Echvi_2347 0.26 -0.3
2,785,100 + Echvi_2347 0.26 +0.0
2,785,101 - Echvi_2347 0.26 +0.1
2,785,102 + Echvi_2347 0.26 -1.8
2,785,102 + Echvi_2347 0.26 -1.2
2,785,102 + Echvi_2347 0.26 -0.1
2,785,117 + Echvi_2347 0.29 -0.3
2,785,118 - Echvi_2347 0.29 -0.7
2,785,160 + Echvi_2347 0.36 +0.4
2,785,161 - Echvi_2347 0.36 -0.6
2,785,223 - Echvi_2347 0.45 +0.2
2,785,238 + Echvi_2347 0.48 -0.7
2,785,238 + Echvi_2347 0.48 +0.8
2,785,238 + Echvi_2347 0.48 +1.4
2,785,239 - Echvi_2347 0.48 +0.1
2,785,319 + Echvi_2347 0.61 -0.6
2,785,348 + Echvi_2347 0.65 -1.2
2,785,349 - Echvi_2347 0.65 -1.3
2,785,349 - Echvi_2347 0.65 -0.0

Or see this region's nucleotide sequence