Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2265

Experiment: m.b. Nickel (II) chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2264 and Echvi_2265 are separated by 10 nucleotidesEchvi_2265 and Echvi_2266 are separated by 1 nucleotides Echvi_2264: Echvi_2264 - Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 2,682,031 to 2,683,593 _2264 Echvi_2265: Echvi_2265 - ATPase, YjeE family, at 2,683,604 to 2,684,026 _2265 Echvi_2266: Echvi_2266 - Alanine dehydrogenase, at 2,684,028 to 2,685,245 _2266 Position (kb) 2683 2684 2685Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2682.612 kb on - strand, within Echvi_2264at 2682.793 kb on + strand, within Echvi_2264at 2682.793 kb on + strand, within Echvi_2264at 2682.794 kb on - strand, within Echvi_2264at 2682.820 kb on + strand, within Echvi_2264at 2682.820 kb on + strand, within Echvi_2264at 2682.820 kb on + strand, within Echvi_2264at 2682.820 kb on + strand, within Echvi_2264at 2682.821 kb on - strand, within Echvi_2264at 2682.821 kb on - strand, within Echvi_2264at 2682.821 kb on - strand, within Echvi_2264at 2682.824 kb on - strand, within Echvi_2264at 2682.824 kb on - strand, within Echvi_2264at 2682.829 kb on - strand, within Echvi_2264at 2682.830 kb on + strand, within Echvi_2264at 2682.843 kb on + strand, within Echvi_2264at 2682.931 kb on - strand, within Echvi_2264at 2682.942 kb on + strand, within Echvi_2264at 2682.942 kb on + strand, within Echvi_2264at 2682.942 kb on + strand, within Echvi_2264at 2682.943 kb on - strand, within Echvi_2264at 2683.008 kb on + strand, within Echvi_2264at 2683.009 kb on - strand, within Echvi_2264at 2683.009 kb on - strand, within Echvi_2264at 2683.231 kb on - strand, within Echvi_2264at 2683.341 kb on - strand, within Echvi_2264at 2683.345 kb on + strand, within Echvi_2264at 2683.347 kb on + strand, within Echvi_2264at 2683.347 kb on + strand, within Echvi_2264at 2683.347 kb on + strand, within Echvi_2264at 2683.347 kb on + strand, within Echvi_2264at 2683.348 kb on - strand, within Echvi_2264at 2683.348 kb on - strand, within Echvi_2264at 2683.348 kb on - strand, within Echvi_2264at 2683.348 kb on - strand, within Echvi_2264at 2683.458 kb on - strandat 2683.489 kb on + strandat 2683.507 kb on + strandat 2683.507 kb on + strandat 2683.574 kb on + strandat 2683.586 kb on + strandat 2684.037 kb on - strandat 2684.054 kb on + strandat 2684.054 kb on + strandat 2684.055 kb on - strandat 2684.071 kb on - strandat 2684.189 kb on - strand, within Echvi_2266at 2684.198 kb on + strand, within Echvi_2266at 2684.199 kb on - strand, within Echvi_2266at 2684.202 kb on - strand, within Echvi_2266at 2684.262 kb on + strand, within Echvi_2266at 2684.263 kb on - strand, within Echvi_2266at 2684.285 kb on - strand, within Echvi_2266at 2684.285 kb on - strand, within Echvi_2266at 2684.289 kb on + strand, within Echvi_2266at 2684.290 kb on - strand, within Echvi_2266at 2684.290 kb on - strand, within Echvi_2266at 2684.364 kb on - strand, within Echvi_2266at 2684.364 kb on - strand, within Echvi_2266at 2684.421 kb on + strand, within Echvi_2266at 2684.421 kb on + strand, within Echvi_2266at 2684.421 kb on + strand, within Echvi_2266at 2684.422 kb on - strand, within Echvi_2266at 2684.422 kb on - strand, within Echvi_2266at 2684.423 kb on + strand, within Echvi_2266at 2684.423 kb on + strand, within Echvi_2266at 2684.424 kb on - strand, within Echvi_2266at 2684.481 kb on - strand, within Echvi_2266at 2684.485 kb on + strand, within Echvi_2266at 2684.486 kb on - strand, within Echvi_2266at 2684.521 kb on + strand, within Echvi_2266at 2684.521 kb on + strand, within Echvi_2266at 2684.528 kb on + strand, within Echvi_2266at 2684.528 kb on + strand, within Echvi_2266at 2684.528 kb on + strand, within Echvi_2266at 2684.621 kb on + strand, within Echvi_2266at 2684.622 kb on - strand, within Echvi_2266at 2684.638 kb on + strand, within Echvi_2266at 2684.638 kb on + strand, within Echvi_2266at 2684.638 kb on + strand, within Echvi_2266at 2684.639 kb on - strand, within Echvi_2266at 2684.639 kb on - strand, within Echvi_2266at 2684.639 kb on - strand, within Echvi_2266at 2684.721 kb on + strand, within Echvi_2266at 2684.722 kb on - strand, within Echvi_2266at 2684.722 kb on - strand, within Echvi_2266at 2684.723 kb on + strand, within Echvi_2266at 2684.724 kb on - strand, within Echvi_2266at 2684.724 kb on - strand, within Echvi_2266at 2684.764 kb on - strand, within Echvi_2266at 2684.764 kb on - strand, within Echvi_2266at 2684.765 kb on + strand, within Echvi_2266at 2684.765 kb on + strand, within Echvi_2266at 2684.765 kb on + strand, within Echvi_2266at 2684.766 kb on - strand, within Echvi_2266at 2684.766 kb on - strand, within Echvi_2266at 2684.766 kb on - strand, within Echvi_2266at 2684.766 kb on - strand, within Echvi_2266at 2684.771 kb on + strand, within Echvi_2266at 2684.784 kb on + strand, within Echvi_2266at 2684.784 kb on + strand, within Echvi_2266at 2684.784 kb on + strand, within Echvi_2266at 2684.785 kb on - strand, within Echvi_2266at 2684.785 kb on - strand, within Echvi_2266at 2684.785 kb on - strand, within Echvi_2266at 2684.785 kb on - strand, within Echvi_2266at 2684.786 kb on + strand, within Echvi_2266at 2684.787 kb on - strand, within Echvi_2266at 2684.787 kb on - strand, within Echvi_2266at 2684.787 kb on - strand, within Echvi_2266at 2684.787 kb on - strand, within Echvi_2266at 2684.791 kb on + strand, within Echvi_2266at 2684.791 kb on + strand, within Echvi_2266at 2684.825 kb on - strand, within Echvi_2266at 2684.860 kb on + strand, within Echvi_2266at 2684.861 kb on - strand, within Echvi_2266at 2684.917 kb on + strand, within Echvi_2266at 2684.917 kb on + strand, within Echvi_2266at 2684.917 kb on + strand, within Echvi_2266at 2684.917 kb on + strand, within Echvi_2266at 2684.918 kb on - strand, within Echvi_2266at 2684.918 kb on - strand, within Echvi_2266at 2684.918 kb on - strand, within Echvi_2266at 2684.924 kb on - strand, within Echvi_2266at 2684.924 kb on - strand, within Echvi_2266at 2684.924 kb on - strand, within Echvi_2266at 2684.924 kb on - strand, within Echvi_2266at 2684.924 kb on - strand, within Echvi_2266at 2684.940 kb on - strand, within Echvi_2266at 2684.980 kb on - strand, within Echvi_2266at 2684.988 kb on + strand, within Echvi_2266at 2684.989 kb on - strand, within Echvi_2266at 2684.989 kb on - strand, within Echvi_2266at 2684.989 kb on - strand, within Echvi_2266at 2684.989 kb on - strand, within Echvi_2266at 2684.996 kb on + strand, within Echvi_2266at 2684.997 kb on - strand, within Echvi_2266

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 0.5 mM
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2,682,612 - Echvi_2264 0.37 +0.8
2,682,793 + Echvi_2264 0.49 -0.1
2,682,793 + Echvi_2264 0.49 -0.5
2,682,794 - Echvi_2264 0.49 -0.0
2,682,820 + Echvi_2264 0.50 -0.6
2,682,820 + Echvi_2264 0.50 +1.1
2,682,820 + Echvi_2264 0.50 -2.3
2,682,820 + Echvi_2264 0.50 -0.2
2,682,821 - Echvi_2264 0.51 +0.7
2,682,821 - Echvi_2264 0.51 -0.8
2,682,821 - Echvi_2264 0.51 -0.8
2,682,824 - Echvi_2264 0.51 -1.7
2,682,824 - Echvi_2264 0.51 +0.5
2,682,829 - Echvi_2264 0.51 +0.7
2,682,830 + Echvi_2264 0.51 +0.3
2,682,843 + Echvi_2264 0.52 -0.5
2,682,931 - Echvi_2264 0.58 -0.6
2,682,942 + Echvi_2264 0.58 -1.6
2,682,942 + Echvi_2264 0.58 -0.5
2,682,942 + Echvi_2264 0.58 -0.0
2,682,943 - Echvi_2264 0.58 -0.6
2,683,008 + Echvi_2264 0.63 +0.5
2,683,009 - Echvi_2264 0.63 +0.0
2,683,009 - Echvi_2264 0.63 -1.8
2,683,231 - Echvi_2264 0.77 -0.1
2,683,341 - Echvi_2264 0.84 +0.8
2,683,345 + Echvi_2264 0.84 -1.6
2,683,347 + Echvi_2264 0.84 -1.2
2,683,347 + Echvi_2264 0.84 -0.8
2,683,347 + Echvi_2264 0.84 -0.3
2,683,347 + Echvi_2264 0.84 -0.7
2,683,348 - Echvi_2264 0.84 +0.6
2,683,348 - Echvi_2264 0.84 -0.4
2,683,348 - Echvi_2264 0.84 +0.7
2,683,348 - Echvi_2264 0.84 +0.6
2,683,458 - +0.2
2,683,489 + -0.5
2,683,507 + -2.4
2,683,507 + -1.3
2,683,574 + -0.4
2,683,586 + -0.2
2,684,037 - -0.9
2,684,054 + -0.2
2,684,054 + -1.5
2,684,055 - +0.8
2,684,071 - -0.5
2,684,189 - Echvi_2266 0.13 -0.2
2,684,198 + Echvi_2266 0.14 -0.7
2,684,199 - Echvi_2266 0.14 -0.2
2,684,202 - Echvi_2266 0.14 +0.6
2,684,262 + Echvi_2266 0.19 -0.2
2,684,263 - Echvi_2266 0.19 +2.5
2,684,285 - Echvi_2266 0.21 +0.7
2,684,285 - Echvi_2266 0.21 -1.0
2,684,289 + Echvi_2266 0.21 -1.0
2,684,290 - Echvi_2266 0.22 -0.8
2,684,290 - Echvi_2266 0.22 -0.8
2,684,364 - Echvi_2266 0.28 +0.7
2,684,364 - Echvi_2266 0.28 +1.0
2,684,421 + Echvi_2266 0.32 +0.5
2,684,421 + Echvi_2266 0.32 -0.7
2,684,421 + Echvi_2266 0.32 +0.2
2,684,422 - Echvi_2266 0.32 +1.6
2,684,422 - Echvi_2266 0.32 -1.3
2,684,423 + Echvi_2266 0.32 -1.7
2,684,423 + Echvi_2266 0.32 -0.1
2,684,424 - Echvi_2266 0.33 -0.8
2,684,481 - Echvi_2266 0.37 +0.4
2,684,485 + Echvi_2266 0.38 -0.5
2,684,486 - Echvi_2266 0.38 -2.4
2,684,521 + Echvi_2266 0.40 +0.8
2,684,521 + Echvi_2266 0.40 +0.4
2,684,528 + Echvi_2266 0.41 +0.0
2,684,528 + Echvi_2266 0.41 +0.5
2,684,528 + Echvi_2266 0.41 -0.4
2,684,621 + Echvi_2266 0.49 -0.5
2,684,622 - Echvi_2266 0.49 +0.2
2,684,638 + Echvi_2266 0.50 -0.9
2,684,638 + Echvi_2266 0.50 +0.3
2,684,638 + Echvi_2266 0.50 +0.1
2,684,639 - Echvi_2266 0.50 -0.0
2,684,639 - Echvi_2266 0.50 +0.2
2,684,639 - Echvi_2266 0.50 -1.3
2,684,721 + Echvi_2266 0.57 +0.2
2,684,722 - Echvi_2266 0.57 +2.8
2,684,722 - Echvi_2266 0.57 +0.1
2,684,723 + Echvi_2266 0.57 -0.5
2,684,724 - Echvi_2266 0.57 +0.4
2,684,724 - Echvi_2266 0.57 -0.4
2,684,764 - Echvi_2266 0.60 -1.4
2,684,764 - Echvi_2266 0.60 +0.7
2,684,765 + Echvi_2266 0.61 +0.2
2,684,765 + Echvi_2266 0.61 -0.6
2,684,765 + Echvi_2266 0.61 +0.5
2,684,766 - Echvi_2266 0.61 +0.1
2,684,766 - Echvi_2266 0.61 +0.5
2,684,766 - Echvi_2266 0.61 +0.3
2,684,766 - Echvi_2266 0.61 -0.4
2,684,771 + Echvi_2266 0.61 +1.4
2,684,784 + Echvi_2266 0.62 +0.0
2,684,784 + Echvi_2266 0.62 +0.4
2,684,784 + Echvi_2266 0.62 +0.1
2,684,785 - Echvi_2266 0.62 -0.5
2,684,785 - Echvi_2266 0.62 +0.1
2,684,785 - Echvi_2266 0.62 +0.1
2,684,785 - Echvi_2266 0.62 +0.9
2,684,786 + Echvi_2266 0.62 +0.7
2,684,787 - Echvi_2266 0.62 -1.9
2,684,787 - Echvi_2266 0.62 -0.5
2,684,787 - Echvi_2266 0.62 +1.9
2,684,787 - Echvi_2266 0.62 -0.5
2,684,791 + Echvi_2266 0.63 +0.2
2,684,791 + Echvi_2266 0.63 +0.0
2,684,825 - Echvi_2266 0.65 +1.5
2,684,860 + Echvi_2266 0.68 -0.1
2,684,861 - Echvi_2266 0.68 -1.1
2,684,917 + Echvi_2266 0.73 -0.2
2,684,917 + Echvi_2266 0.73 +0.4
2,684,917 + Echvi_2266 0.73 +1.6
2,684,917 + Echvi_2266 0.73 -0.1
2,684,918 - Echvi_2266 0.73 +0.3
2,684,918 - Echvi_2266 0.73 +2.2
2,684,918 - Echvi_2266 0.73 +0.2
2,684,924 - Echvi_2266 0.74 +0.6
2,684,924 - Echvi_2266 0.74 -0.1
2,684,924 - Echvi_2266 0.74 -0.0
2,684,924 - Echvi_2266 0.74 +0.9
2,684,924 - Echvi_2266 0.74 +1.2
2,684,940 - Echvi_2266 0.75 +0.4
2,684,980 - Echvi_2266 0.78 -1.7
2,684,988 + Echvi_2266 0.79 -0.6
2,684,989 - Echvi_2266 0.79 -0.2
2,684,989 - Echvi_2266 0.79 +0.2
2,684,989 - Echvi_2266 0.79 +0.3
2,684,989 - Echvi_2266 0.79 -0.3
2,684,996 + Echvi_2266 0.79 -0.2
2,684,997 - Echvi_2266 0.80 +0.2

Or see this region's nucleotide sequence