Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2105

Experiment: m.b. Nickel (II) chloride 0.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_2104 and Echvi_2105 overlap by 4 nucleotidesEchvi_2105 and Echvi_2106 overlap by 1 nucleotidesEchvi_2106 and Echvi_2107 are separated by 26 nucleotides Echvi_2104: Echvi_2104 - Uncharacterized protein required for cytochrome oxidase assembly, at 2,485,562 to 2,486,644 _2104 Echvi_2105: Echvi_2105 - protoheme IX farnesyltransferase, at 2,486,641 to 2,487,546 _2105 Echvi_2106: Echvi_2106 - Heme/copper-type cytochrome/quinol oxidase, subunit 3, at 2,487,546 to 2,488,127 _2106 Echvi_2107: Echvi_2107 - Heme/copper-type cytochrome/quinol oxidase, subunit 3, at 2,488,154 to 2,488,924 _2107 Position (kb) 2486 2487 2488Strain fitness (log2 ratio) -1 0 1at 2486.601 kb on + strandat 2486.601 kb on + strandat 2486.625 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 0.5 mM
remove
2,486,601 + -0.1
2,486,601 + +0.5
2,486,625 + +0.2

Or see this region's nucleotide sequence