Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2101

Experiment: m.b. Nickel (II) chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2099 and Echvi_2100 are separated by 17 nucleotidesEchvi_2100 and Echvi_2101 overlap by 1 nucleotidesEchvi_2101 and Echvi_2102 are separated by 24 nucleotides Echvi_2099: Echvi_2099 - Protein of unknown function (DUF3341)., at 2,480,025 to 2,480,555 _2099 Echvi_2100: Echvi_2100 - Cytochrome c, mono- and diheme variants, at 2,480,573 to 2,481,202 _2100 Echvi_2101: Echvi_2101 - hypothetical protein, at 2,481,202 to 2,482,602 _2101 Echvi_2102: Echvi_2102 - Heme/copper-type cytochrome/quinol oxidases, subunit 2, at 2,482,627 to 2,483,655 _2102 Position (kb) 2481 2482 2483Strain fitness (log2 ratio) -1 0 1at 2480.556 kb on + strandat 2481.175 kb on + strandat 2482.585 kb on + strandat 2482.600 kb on + strandat 2482.603 kb on + strandat 2482.620 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 0.5 mM
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2,480,556 + -0.2
2,481,175 + -0.0
2,482,585 + -0.4
2,482,600 + -1.2
2,482,603 + -1.1
2,482,620 + +1.6

Or see this region's nucleotide sequence