Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2074

Experiment: m.b. Nickel (II) chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2073 and Echvi_2074 are separated by 49 nucleotidesEchvi_2074 and Echvi_2075 are separated by 7 nucleotidesEchvi_2075 and Echvi_2076 are separated by 206 nucleotides Echvi_2073: Echvi_2073 - Organic solvent tolerance protein OstA, at 2,443,191 to 2,444,840 _2073 Echvi_2074: Echvi_2074 - tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine synthetase, C-terminal domain, at 2,444,890 to 2,446,212 _2074 Echvi_2075: Echvi_2075 - Cyclic nucleotide-binding domain., at 2,446,220 to 2,446,735 _2075 Echvi_2076: Echvi_2076 - malate dehydrogenase, NAD-dependent, at 2,446,942 to 2,447,880 _2076 Position (kb) 2444 2445 2446 2447Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2444.847 kb on - strandat 2444.851 kb on - strandat 2444.851 kb on - strandat 2444.866 kb on - strandat 2444.878 kb on + strandat 2444.916 kb on - strandat 2444.916 kb on - strandat 2446.206 kb on - strandat 2446.244 kb on + strandat 2446.305 kb on + strand, within Echvi_2075at 2446.341 kb on + strand, within Echvi_2075at 2446.356 kb on - strand, within Echvi_2075at 2446.371 kb on + strand, within Echvi_2075at 2446.406 kb on + strand, within Echvi_2075at 2446.406 kb on + strand, within Echvi_2075at 2446.407 kb on - strand, within Echvi_2075at 2446.407 kb on - strand, within Echvi_2075at 2446.407 kb on - strand, within Echvi_2075at 2446.407 kb on - strand, within Echvi_2075at 2446.407 kb on - strand, within Echvi_2075at 2446.407 kb on - strand, within Echvi_2075at 2446.407 kb on - strand, within Echvi_2075at 2446.467 kb on + strand, within Echvi_2075at 2446.472 kb on - strand, within Echvi_2075at 2446.472 kb on - strand, within Echvi_2075at 2446.533 kb on - strand, within Echvi_2075at 2446.584 kb on - strand, within Echvi_2075at 2446.592 kb on - strand, within Echvi_2075at 2446.621 kb on - strand, within Echvi_2075at 2446.652 kb on + strand, within Echvi_2075at 2446.652 kb on + strand, within Echvi_2075at 2446.652 kb on + strand, within Echvi_2075at 2446.652 kb on + strand, within Echvi_2075at 2446.652 kb on + strand, within Echvi_2075at 2446.653 kb on - strand, within Echvi_2075at 2446.653 kb on - strand, within Echvi_2075at 2446.655 kb on + strand, within Echvi_2075at 2446.656 kb on - strand, within Echvi_2075at 2446.656 kb on - strand, within Echvi_2075at 2446.688 kb on + strandat 2446.693 kb on + strandat 2446.693 kb on + strandat 2446.693 kb on + strandat 2446.694 kb on - strandat 2446.733 kb on + strandat 2446.766 kb on + strandat 2446.767 kb on - strandat 2446.851 kb on - strandat 2446.851 kb on - strandat 2446.925 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 0.5 mM
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2,444,847 - +0.9
2,444,851 - -1.0
2,444,851 - -3.7
2,444,866 - +0.1
2,444,878 + +2.0
2,444,916 - +1.6
2,444,916 - -1.7
2,446,206 - +0.8
2,446,244 + -0.1
2,446,305 + Echvi_2075 0.16 +0.4
2,446,341 + Echvi_2075 0.23 +0.3
2,446,356 - Echvi_2075 0.26 -0.4
2,446,371 + Echvi_2075 0.29 +0.8
2,446,406 + Echvi_2075 0.36 +1.7
2,446,406 + Echvi_2075 0.36 +0.5
2,446,407 - Echvi_2075 0.36 -0.1
2,446,407 - Echvi_2075 0.36 -0.7
2,446,407 - Echvi_2075 0.36 -0.0
2,446,407 - Echvi_2075 0.36 +0.0
2,446,407 - Echvi_2075 0.36 -0.4
2,446,407 - Echvi_2075 0.36 +1.4
2,446,407 - Echvi_2075 0.36 +0.9
2,446,467 + Echvi_2075 0.48 +0.2
2,446,472 - Echvi_2075 0.49 +0.2
2,446,472 - Echvi_2075 0.49 +0.3
2,446,533 - Echvi_2075 0.61 +0.2
2,446,584 - Echvi_2075 0.71 +0.8
2,446,592 - Echvi_2075 0.72 +0.3
2,446,621 - Echvi_2075 0.78 +0.2
2,446,652 + Echvi_2075 0.84 -1.1
2,446,652 + Echvi_2075 0.84 -0.9
2,446,652 + Echvi_2075 0.84 -0.5
2,446,652 + Echvi_2075 0.84 -0.2
2,446,652 + Echvi_2075 0.84 +0.4
2,446,653 - Echvi_2075 0.84 +0.2
2,446,653 - Echvi_2075 0.84 +0.3
2,446,655 + Echvi_2075 0.84 +1.2
2,446,656 - Echvi_2075 0.84 -1.3
2,446,656 - Echvi_2075 0.84 -0.1
2,446,688 + -0.7
2,446,693 + -0.8
2,446,693 + +0.9
2,446,693 + -0.0
2,446,694 - -1.0
2,446,733 + +0.3
2,446,766 + +0.5
2,446,767 - -0.7
2,446,851 - -0.1
2,446,851 - -0.2
2,446,925 + +1.0

Or see this region's nucleotide sequence