Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2014

Experiment: m.b. Nickel (II) chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2013 and Echvi_2014 overlap by 14 nucleotidesEchvi_2014 and Echvi_2015 are separated by 49 nucleotidesEchvi_2015 and Echvi_2016 are separated by 14 nucleotides Echvi_2013: Echvi_2013 - NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit, at 2,365,963 to 2,367,165 _2013 Echvi_2014: Echvi_2014 - NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit, at 2,367,152 to 2,367,901 _2014 Echvi_2015: Echvi_2015 - NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit, at 2,367,951 to 2,368,634 _2015 Echvi_2016: Echvi_2016 - NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit, at 2,368,649 to 2,369,260 _2016 Position (kb) 2367 2368Strain fitness (log2 ratio) -3 -2 -1 0 1at 2367.922 kb on + strandat 2367.927 kb on + strandat 2367.942 kb on + strandat 2368.600 kb on + strandat 2368.624 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 0.5 mM
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2,367,922 + -1.4
2,367,927 + +0.7
2,367,942 + -1.0
2,368,600 + -3.1
2,368,624 + -0.1

Or see this region's nucleotide sequence