Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2012

Experiment: m.b. Nickel (II) chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2011 and Echvi_2012 are separated by 127 nucleotidesEchvi_2012 and Echvi_2013 are separated by 5 nucleotides Echvi_2011: Echvi_2011 - (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming), at 2,363,569 to 2,364,465 _2011 Echvi_2012: Echvi_2012 - NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit, at 2,364,593 to 2,365,957 _2012 Echvi_2013: Echvi_2013 - NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit, at 2,365,963 to 2,367,165 _2013 Position (kb) 2364 2365 2366Strain fitness (log2 ratio) -2 -1 0 1at 2364.427 kb on + strandat 2364.428 kb on - strandat 2364.429 kb on + strandat 2364.432 kb on + strandat 2364.433 kb on - strandat 2364.463 kb on + strandat 2364.539 kb on + strandat 2364.539 kb on + strandat 2365.935 kb on + strandat 2365.949 kb on + strandat 2365.951 kb on + strandat 2365.955 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 0.5 mM
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2,364,427 + -1.8
2,364,428 - -1.1
2,364,429 + -1.0
2,364,432 + -2.7
2,364,433 - +0.4
2,364,463 + -0.4
2,364,539 + +0.6
2,364,539 + +0.3
2,365,935 + +1.6
2,365,949 + -1.1
2,365,951 + -2.1
2,365,955 + +0.4

Or see this region's nucleotide sequence