Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2011

Experiment: m.b. Nickel (II) chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2009 and Echvi_2010 are separated by 186 nucleotidesEchvi_2010 and Echvi_2011 are separated by 3 nucleotidesEchvi_2011 and Echvi_2012 are separated by 127 nucleotides Echvi_2009: Echvi_2009 - adenine deaminase, at 2,361,055 to 2,362,692 _2009 Echvi_2010: Echvi_2010 - cytidylate kinase, at 2,362,879 to 2,363,565 _2010 Echvi_2011: Echvi_2011 - (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming), at 2,363,569 to 2,364,465 _2011 Echvi_2012: Echvi_2012 - NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit, at 2,364,593 to 2,365,957 _2012 Position (kb) 2363 2364 2365Strain fitness (log2 ratio) -2 -1 0 1at 2362.660 kb on - strandat 2362.660 kb on - strandat 2362.709 kb on - strandat 2362.757 kb on + strandat 2362.757 kb on + strandat 2362.757 kb on + strandat 2362.757 kb on + strandat 2362.758 kb on - strandat 2362.761 kb on + strandat 2362.761 kb on + strandat 2362.789 kb on + strandat 2362.790 kb on - strandat 2362.790 kb on - strandat 2362.798 kb on + strandat 2362.819 kb on + strandat 2362.838 kb on + strandat 2362.849 kb on + strandat 2362.890 kb on - strandat 2363.546 kb on + strandat 2363.563 kb on + strandat 2364.427 kb on + strandat 2364.428 kb on - strandat 2364.429 kb on + strandat 2364.432 kb on + strandat 2364.433 kb on - strandat 2364.463 kb on + strandat 2364.539 kb on + strandat 2364.539 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 0.5 mM
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2,362,660 - -0.7
2,362,660 - -0.9
2,362,709 - -0.6
2,362,757 + -0.4
2,362,757 + +0.3
2,362,757 + -1.1
2,362,757 + -0.6
2,362,758 - -0.0
2,362,761 + -0.4
2,362,761 + +0.7
2,362,789 + +1.1
2,362,790 - -0.8
2,362,790 - -0.5
2,362,798 + +0.8
2,362,819 + -0.1
2,362,838 + -0.4
2,362,849 + +1.5
2,362,890 - +1.3
2,363,546 + +0.4
2,363,563 + -0.2
2,364,427 + -1.8
2,364,428 - -1.1
2,364,429 + -1.0
2,364,432 + -2.7
2,364,433 - +0.4
2,364,463 + -0.4
2,364,539 + +0.6
2,364,539 + +0.3

Or see this region's nucleotide sequence