Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1740

Experiment: m.b. Nickel (II) chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1738 and Echvi_1739 are separated by 290 nucleotidesEchvi_1739 and Echvi_1740 are separated by 45 nucleotidesEchvi_1740 and Echvi_1741 are separated by 18 nucleotides Echvi_1738: Echvi_1738 - hypothetical protein, at 2,047,985 to 2,049,664 _1738 Echvi_1739: Echvi_1739 - ribosomal protein L31, at 2,049,955 to 2,050,200 _1739 Echvi_1740: Echvi_1740 - UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase, at 2,050,246 to 2,051,475 _1740 Echvi_1741: Echvi_1741 - DNA polymerase III, gamma/tau subunits, at 2,051,494 to 2,052,636 _1741 Position (kb) 2050 2051 2052Strain fitness (log2 ratio) -2 -1 0 1at 2049.270 kb on + strand, within Echvi_1738at 2049.270 kb on + strand, within Echvi_1738at 2049.270 kb on + strand, within Echvi_1738at 2049.311 kb on - strand, within Echvi_1738at 2049.316 kb on - strand, within Echvi_1738at 2049.318 kb on + strand, within Echvi_1738at 2049.318 kb on + strand, within Echvi_1738at 2049.410 kb on + strand, within Echvi_1738at 2049.411 kb on - strand, within Echvi_1738at 2049.495 kb on - strand, within Echvi_1738at 2049.570 kb on + strandat 2049.571 kb on - strandat 2049.617 kb on + strandat 2049.617 kb on + strandat 2049.617 kb on + strandat 2049.617 kb on + strandat 2049.617 kb on + strandat 2049.618 kb on - strandat 2049.618 kb on - strandat 2049.618 kb on - strandat 2049.618 kb on - strandat 2049.618 kb on - strandat 2049.618 kb on - strandat 2049.638 kb on + strandat 2049.638 kb on + strandat 2049.638 kb on + strandat 2049.638 kb on + strandat 2049.664 kb on + strandat 2049.664 kb on + strandat 2049.665 kb on - strandat 2049.665 kb on - strandat 2049.665 kb on - strandat 2049.665 kb on - strandat 2049.665 kb on - strandat 2049.717 kb on + strandat 2049.718 kb on - strandat 2049.718 kb on - strandat 2049.718 kb on - strandat 2049.764 kb on + strandat 2049.834 kb on + strandat 2050.275 kb on + strandat 2051.473 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 0.5 mM
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2,049,270 + Echvi_1738 0.76 +0.8
2,049,270 + Echvi_1738 0.76 -0.2
2,049,270 + Echvi_1738 0.76 -0.1
2,049,311 - Echvi_1738 0.79 -1.0
2,049,316 - Echvi_1738 0.79 -0.4
2,049,318 + Echvi_1738 0.79 -1.1
2,049,318 + Echvi_1738 0.79 -0.9
2,049,410 + Echvi_1738 0.85 -0.1
2,049,411 - Echvi_1738 0.85 +0.0
2,049,495 - Echvi_1738 0.90 -0.8
2,049,570 + +1.3
2,049,571 - +1.4
2,049,617 + +1.1
2,049,617 + -0.3
2,049,617 + -0.3
2,049,617 + -0.2
2,049,617 + -1.0
2,049,618 - +1.3
2,049,618 - -0.2
2,049,618 - -0.0
2,049,618 - +0.4
2,049,618 - -0.8
2,049,618 - +0.4
2,049,638 + -0.2
2,049,638 + -0.6
2,049,638 + +1.1
2,049,638 + -0.4
2,049,664 + -0.6
2,049,664 + +1.3
2,049,665 - -0.1
2,049,665 - -0.3
2,049,665 - -0.1
2,049,665 - +0.6
2,049,665 - -0.5
2,049,717 + +0.1
2,049,718 - -0.4
2,049,718 - -0.4
2,049,718 - -2.3
2,049,764 + -0.2
2,049,834 + +0.5
2,050,275 + -0.2
2,051,473 + -0.4

Or see this region's nucleotide sequence