Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1532

Experiment: m.b. Nickel (II) chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1531 and Echvi_1532 are separated by 37 nucleotidesEchvi_1532 and Echvi_1533 overlap by 26 nucleotidesEchvi_1533 and Echvi_1534 overlap by 17 nucleotides Echvi_1531: Echvi_1531 - putative TIM-barrel protein, nifR3 family, at 1,755,914 to 1,756,915 _1531 Echvi_1532: Echvi_1532 - CAAX amino terminal protease family., at 1,756,953 to 1,757,912 _1532 Echvi_1533: Echvi_1533 - hypothetical protein, at 1,757,887 to 1,758,093 _1533 Echvi_1534: Echvi_1534 - CDP-diglyceride synthetase, at 1,758,077 to 1,758,916 _1534 Position (kb) 1756 1757 1758Strain fitness (log2 ratio) -2 -1 0 1at 1755.987 kb on + strandat 1755.987 kb on + strandat 1755.987 kb on + strandat 1755.987 kb on + strandat 1755.987 kb on + strandat 1755.987 kb on + strandat 1755.987 kb on + strandat 1755.988 kb on - strandat 1755.988 kb on - strandat 1756.047 kb on + strand, within Echvi_1531at 1756.056 kb on + strand, within Echvi_1531at 1756.056 kb on + strand, within Echvi_1531at 1756.057 kb on - strand, within Echvi_1531at 1756.057 kb on - strand, within Echvi_1531at 1756.186 kb on - strand, within Echvi_1531at 1756.206 kb on - strand, within Echvi_1531at 1756.356 kb on + strand, within Echvi_1531at 1756.356 kb on + strand, within Echvi_1531at 1756.356 kb on + strand, within Echvi_1531at 1756.356 kb on + strand, within Echvi_1531at 1756.356 kb on + strand, within Echvi_1531at 1756.357 kb on - strand, within Echvi_1531at 1756.378 kb on + strand, within Echvi_1531at 1756.380 kb on + strand, within Echvi_1531at 1756.381 kb on - strand, within Echvi_1531at 1756.472 kb on - strand, within Echvi_1531at 1756.595 kb on + strand, within Echvi_1531at 1756.796 kb on - strand, within Echvi_1531at 1756.910 kb on + strandat 1757.967 kb on + strand, within Echvi_1533at 1757.967 kb on + strand, within Echvi_1533at 1757.968 kb on - strand, within Echvi_1533at 1758.022 kb on + strand, within Echvi_1533at 1758.023 kb on - strand, within Echvi_1533at 1758.072 kb on + strand, within Echvi_1533

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 0.5 mM
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1,755,987 + -0.8
1,755,987 + -0.0
1,755,987 + +0.0
1,755,987 + -0.6
1,755,987 + -0.8
1,755,987 + -0.4
1,755,987 + +1.1
1,755,988 - -0.6
1,755,988 - -2.2
1,756,047 + Echvi_1531 0.13 +0.1
1,756,056 + Echvi_1531 0.14 +0.7
1,756,056 + Echvi_1531 0.14 -2.1
1,756,057 - Echvi_1531 0.14 -1.3
1,756,057 - Echvi_1531 0.14 -0.5
1,756,186 - Echvi_1531 0.27 +0.3
1,756,206 - Echvi_1531 0.29 -0.5
1,756,356 + Echvi_1531 0.44 +1.1
1,756,356 + Echvi_1531 0.44 +0.4
1,756,356 + Echvi_1531 0.44 -1.0
1,756,356 + Echvi_1531 0.44 -1.6
1,756,356 + Echvi_1531 0.44 -0.1
1,756,357 - Echvi_1531 0.44 -0.7
1,756,378 + Echvi_1531 0.46 +0.4
1,756,380 + Echvi_1531 0.47 -0.3
1,756,381 - Echvi_1531 0.47 -1.6
1,756,472 - Echvi_1531 0.56 +1.5
1,756,595 + Echvi_1531 0.68 -0.3
1,756,796 - Echvi_1531 0.88 +0.4
1,756,910 + -1.2
1,757,967 + Echvi_1533 0.39 -2.4
1,757,967 + Echvi_1533 0.39 +1.1
1,757,968 - Echvi_1533 0.39 -1.6
1,758,022 + Echvi_1533 0.65 -0.3
1,758,023 - Echvi_1533 0.66 -0.2
1,758,072 + Echvi_1533 0.89 +0.7

Or see this region's nucleotide sequence