Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1469

Experiment: m.b. Nickel (II) chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1468 and Echvi_1469 are separated by 482 nucleotidesEchvi_1469 and Echvi_1470 are separated by 71 nucleotidesEchvi_1470 and Echvi_1471 are separated by 277 nucleotides Echvi_1468: Echvi_1468 - cell shape determining protein, MreB/Mrl family, at 1,681,893 to 1,682,921 _1468 Echvi_1469: Echvi_1469 - AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful), at 1,683,404 to 1,684,930 _1469 Echvi_1470: Echvi_1470 - phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent, at 1,685,002 to 1,685,559 _1470 Echvi_1471: Echvi_1471 - 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases, at 1,685,837 to 1,686,712 _1471 Position (kb) 1683 1684 1685Strain fitness (log2 ratio) -2 -1 0 1 2at 1682.986 kb on - strandat 1683.073 kb on + strandat 1683.074 kb on - strandat 1683.115 kb on + strandat 1683.115 kb on + strandat 1683.116 kb on - strandat 1683.305 kb on + strandat 1683.306 kb on - strandat 1683.310 kb on + strandat 1683.310 kb on + strandat 1683.311 kb on - strandat 1683.311 kb on - strandat 1683.387 kb on + strandat 1683.393 kb on - strandat 1683.400 kb on + strandat 1684.953 kb on - strandat 1684.953 kb on - strandat 1684.953 kb on - strandat 1685.584 kb on - strandat 1685.593 kb on + strandat 1685.593 kb on + strandat 1685.612 kb on + strandat 1685.652 kb on + strandat 1685.713 kb on - strandat 1685.715 kb on - strandat 1685.768 kb on - strandat 1685.768 kb on - strandat 1685.771 kb on + strandat 1685.831 kb on - strandat 1685.839 kb on - strandat 1685.841 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 0.5 mM
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1,682,986 - +1.0
1,683,073 + +0.4
1,683,074 - +0.1
1,683,115 + -0.2
1,683,115 + +0.2
1,683,116 - -0.4
1,683,305 + +1.8
1,683,306 - -0.8
1,683,310 + +2.1
1,683,310 + +0.7
1,683,311 - +0.7
1,683,311 - -0.7
1,683,387 + +0.5
1,683,393 - +0.4
1,683,400 + -0.2
1,684,953 - +0.2
1,684,953 - -0.3
1,684,953 - -0.2
1,685,584 - -1.7
1,685,593 + -1.1
1,685,593 + -1.2
1,685,612 + +0.2
1,685,652 + -0.3
1,685,713 - -0.3
1,685,715 - -2.4
1,685,768 - -1.6
1,685,768 - +0.6
1,685,771 + -0.3
1,685,831 - +1.9
1,685,839 - +0.1
1,685,841 - +0.1

Or see this region's nucleotide sequence