Experiment: m.b. Nickel (II) chloride 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0800 and Echvi_0801 are separated by 41 nucleotides Echvi_0801 and Echvi_0802 are separated by 84 nucleotides Echvi_0802 and Echvi_0803 are separated by 3 nucleotides Echvi_0803 and Echvi_0804 are separated by 228 nucleotides Echvi_0804 and Echvi_0805 are separated by 33 nucleotides
Echvi_0800: Echvi_0800 - Cytochrome c biogenesis factor, at 911,244 to 913,772
_0800
Echvi_0801: Echvi_0801 - Cytochrome c-type biogenesis protein CcmE, at 913,814 to 914,239
_0801
Echvi_0802: Echvi_0802 - hypothetical protein, at 914,324 to 914,566
_0802
Echvi_0803: Echvi_0803 - ABC-type transport system involved in cytochrome c biogenesis, permease component, at 914,570 to 915,244
_0803
Echvi_0804: Echvi_0804 - ABC-type transport system involved in cytochrome c biogenesis, permease component, at 915,473 to 916,138
_0804
Echvi_0805: Echvi_0805 - Thiol-disulfide isomerase and thioredoxins, at 916,172 to 917,713
_0805
Position (kb)
914
915
916 Strain fitness (log2 ratio)
-2
-1
0
1 at 913.773 kb on - strand at 913.773 kb on - strand at 914.290 kb on - strand at 914.333 kb on - strand at 914.595 kb on - strand at 914.598 kb on - strand at 914.598 kb on - strand at 915.367 kb on - strand at 915.425 kb on - strand at 915.458 kb on + strand at 915.475 kb on - strand at 916.151 kb on - strand at 916.171 kb on - strand at 916.171 kb on - strand at 916.176 kb on + strand at 916.179 kb on + strand at 916.180 kb on - strand at 916.203 kb on - strand at 916.222 kb on - strand at 916.222 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 0.5 mM remove 913,773 - -0.6 913,773 - +1.1 914,290 - +0.9 914,333 - -0.2 914,595 - -0.0 914,598 - +0.1 914,598 - -0.1 915,367 - +0.4 915,425 - +0.9 915,458 + +0.2 915,475 - -1.8 916,151 - +1.2 916,171 - +0.4 916,171 - +0.1 916,176 + +1.2 916,179 + +0.4 916,180 - +0.5 916,203 - -0.3 916,222 - -0.8 916,222 - -0.7
Or see this region's nucleotide sequence