Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0803

Experiment: m.b. Nickel (II) chloride 0.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_0800 and Echvi_0801 are separated by 41 nucleotidesEchvi_0801 and Echvi_0802 are separated by 84 nucleotidesEchvi_0802 and Echvi_0803 are separated by 3 nucleotidesEchvi_0803 and Echvi_0804 are separated by 228 nucleotidesEchvi_0804 and Echvi_0805 are separated by 33 nucleotides Echvi_0800: Echvi_0800 - Cytochrome c biogenesis factor, at 911,244 to 913,772 _0800 Echvi_0801: Echvi_0801 - Cytochrome c-type biogenesis protein CcmE, at 913,814 to 914,239 _0801 Echvi_0802: Echvi_0802 - hypothetical protein, at 914,324 to 914,566 _0802 Echvi_0803: Echvi_0803 - ABC-type transport system involved in cytochrome c biogenesis, permease component, at 914,570 to 915,244 _0803 Echvi_0804: Echvi_0804 - ABC-type transport system involved in cytochrome c biogenesis, permease component, at 915,473 to 916,138 _0804 Echvi_0805: Echvi_0805 - Thiol-disulfide isomerase and thioredoxins, at 916,172 to 917,713 _0805 Position (kb) 914 915 916Strain fitness (log2 ratio) -2 -1 0 1at 913.773 kb on - strandat 913.773 kb on - strandat 914.290 kb on - strandat 914.333 kb on - strandat 914.595 kb on - strandat 914.598 kb on - strandat 914.598 kb on - strandat 915.367 kb on - strandat 915.425 kb on - strandat 915.458 kb on + strandat 915.475 kb on - strandat 916.151 kb on - strandat 916.171 kb on - strandat 916.171 kb on - strandat 916.176 kb on + strandat 916.179 kb on + strandat 916.180 kb on - strandat 916.203 kb on - strandat 916.222 kb on - strandat 916.222 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 0.5 mM
remove
913,773 - -0.6
913,773 - +1.1
914,290 - +0.9
914,333 - -0.2
914,595 - -0.0
914,598 - +0.1
914,598 - -0.1
915,367 - +0.4
915,425 - +0.9
915,458 + +0.2
915,475 - -1.8
916,151 - +1.2
916,171 - +0.4
916,171 - +0.1
916,176 + +1.2
916,179 + +0.4
916,180 - +0.5
916,203 - -0.3
916,222 - -0.8
916,222 - -0.7

Or see this region's nucleotide sequence