Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0672

Experiment: m.b. Nickel (II) chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0670 and Echvi_0671 are separated by 8 nucleotidesEchvi_0671 and Echvi_0672 are separated by 50 nucleotidesEchvi_0672 and Echvi_0673 are separated by 90 nucleotidesEchvi_0673 and Echvi_0674 are separated by 110 nucleotides Echvi_0670: Echvi_0670 - DNA polymerase elongation subunit (family B), at 753,498 to 754,223 _0670 Echvi_0671: Echvi_0671 - hypothetical protein, at 754,232 to 754,633 _0671 Echvi_0672: Echvi_0672 - lipoate-protein ligase B, at 754,684 to 755,442 _0672 Echvi_0673: Echvi_0673 - Predicted endonuclease distantly related to archaeal Holliday junction resolvase, at 755,533 to 755,889 _0673 Echvi_0674: Echvi_0674 - hypothetical protein, at 756,000 to 756,863 _0674 Position (kb) 754 755 756Strain fitness (log2 ratio) -2 -1 0 1 2 3at 753.715 kb on + strand, within Echvi_0670at 753.722 kb on + strand, within Echvi_0670at 753.722 kb on + strand, within Echvi_0670at 753.722 kb on + strand, within Echvi_0670at 753.723 kb on - strand, within Echvi_0670at 753.723 kb on - strand, within Echvi_0670at 753.723 kb on - strand, within Echvi_0670at 753.723 kb on - strand, within Echvi_0670at 753.723 kb on - strand, within Echvi_0670at 753.724 kb on + strand, within Echvi_0670at 753.814 kb on - strand, within Echvi_0670at 753.818 kb on + strand, within Echvi_0670at 753.819 kb on - strand, within Echvi_0670at 753.900 kb on + strand, within Echvi_0670at 753.991 kb on + strand, within Echvi_0670at 754.039 kb on + strand, within Echvi_0670at 754.039 kb on + strand, within Echvi_0670at 754.039 kb on + strand, within Echvi_0670at 754.039 kb on + strand, within Echvi_0670at 754.040 kb on - strand, within Echvi_0670at 754.040 kb on - strand, within Echvi_0670at 754.040 kb on - strand, within Echvi_0670at 754.040 kb on - strand, within Echvi_0670at 754.040 kb on - strand, within Echvi_0670at 754.041 kb on + strand, within Echvi_0670at 754.042 kb on - strand, within Echvi_0670at 754.042 kb on - strand, within Echvi_0670at 754.043 kb on + strand, within Echvi_0670at 754.043 kb on + strand, within Echvi_0670at 754.060 kb on + strand, within Echvi_0670at 754.062 kb on + strand, within Echvi_0670at 754.128 kb on + strand, within Echvi_0670at 754.224 kb on - strandat 754.328 kb on + strand, within Echvi_0671at 754.328 kb on + strand, within Echvi_0671at 754.329 kb on - strand, within Echvi_0671at 754.341 kb on - strand, within Echvi_0671at 754.341 kb on - strand, within Echvi_0671at 754.342 kb on + strand, within Echvi_0671at 754.342 kb on + strand, within Echvi_0671at 754.342 kb on + strand, within Echvi_0671at 754.344 kb on + strand, within Echvi_0671at 754.344 kb on + strand, within Echvi_0671at 754.345 kb on - strand, within Echvi_0671at 754.345 kb on - strand, within Echvi_0671at 754.345 kb on - strand, within Echvi_0671at 754.347 kb on + strand, within Echvi_0671at 754.347 kb on + strand, within Echvi_0671at 754.348 kb on - strand, within Echvi_0671at 754.348 kb on - strand, within Echvi_0671at 754.438 kb on + strand, within Echvi_0671at 754.438 kb on + strand, within Echvi_0671at 754.439 kb on - strand, within Echvi_0671at 754.540 kb on + strand, within Echvi_0671at 754.540 kb on + strand, within Echvi_0671at 754.542 kb on + strand, within Echvi_0671at 754.542 kb on + strand, within Echvi_0671at 754.542 kb on + strand, within Echvi_0671at 754.543 kb on - strand, within Echvi_0671at 754.543 kb on - strand, within Echvi_0671at 754.543 kb on - strand, within Echvi_0671at 754.561 kb on + strand, within Echvi_0671at 754.562 kb on - strand, within Echvi_0671at 754.562 kb on - strand, within Echvi_0671at 754.562 kb on - strand, within Echvi_0671at 754.562 kb on - strand, within Echvi_0671at 754.619 kb on + strandat 754.636 kb on + strandat 754.636 kb on + strandat 754.637 kb on - strandat 754.637 kb on - strandat 754.640 kb on - strandat 754.650 kb on + strandat 754.651 kb on - strandat 754.667 kb on - strandat 755.409 kb on - strandat 755.425 kb on + strandat 755.529 kb on + strandat 755.547 kb on + strandat 755.547 kb on + strandat 755.547 kb on + strandat 755.548 kb on - strandat 755.604 kb on + strand, within Echvi_0673at 755.604 kb on + strand, within Echvi_0673at 755.605 kb on - strand, within Echvi_0673at 755.624 kb on - strand, within Echvi_0673at 755.624 kb on - strand, within Echvi_0673at 755.624 kb on - strand, within Echvi_0673at 755.631 kb on + strand, within Echvi_0673at 755.631 kb on + strand, within Echvi_0673at 755.719 kb on + strand, within Echvi_0673at 755.720 kb on - strand, within Echvi_0673at 755.740 kb on + strand, within Echvi_0673at 755.742 kb on + strand, within Echvi_0673at 755.779 kb on + strand, within Echvi_0673at 755.779 kb on + strand, within Echvi_0673at 755.779 kb on + strand, within Echvi_0673at 755.780 kb on - strand, within Echvi_0673at 755.780 kb on - strand, within Echvi_0673at 755.780 kb on - strand, within Echvi_0673at 755.780 kb on - strand, within Echvi_0673at 755.781 kb on + strand, within Echvi_0673at 755.782 kb on - strand, within Echvi_0673at 755.802 kb on + strand, within Echvi_0673at 755.803 kb on - strand, within Echvi_0673at 755.834 kb on - strand, within Echvi_0673at 755.862 kb on + strandat 755.863 kb on - strandat 755.920 kb on + strandat 756.053 kb on + strandat 756.053 kb on + strandat 756.053 kb on + strandat 756.053 kb on + strandat 756.053 kb on + strandat 756.054 kb on - strandat 756.054 kb on - strandat 756.054 kb on - strandat 756.055 kb on + strandat 756.055 kb on + strandat 756.055 kb on + strandat 756.055 kb on + strandat 756.055 kb on + strandat 756.056 kb on - strandat 756.056 kb on - strandat 756.056 kb on - strandat 756.056 kb on - strandat 756.056 kb on - strandat 756.056 kb on - strandat 756.056 kb on - strandat 756.056 kb on - strandat 756.056 kb on - strandat 756.056 kb on - strandat 756.111 kb on + strand, within Echvi_0674at 756.131 kb on + strand, within Echvi_0674at 756.176 kb on - strand, within Echvi_0674at 756.218 kb on - strand, within Echvi_0674at 756.233 kb on + strand, within Echvi_0674at 756.241 kb on + strand, within Echvi_0674at 756.241 kb on + strand, within Echvi_0674at 756.242 kb on - strand, within Echvi_0674at 756.242 kb on - strand, within Echvi_0674at 756.242 kb on - strand, within Echvi_0674at 756.242 kb on - strand, within Echvi_0674at 756.242 kb on - strand, within Echvi_0674at 756.242 kb on - strand, within Echvi_0674at 756.262 kb on + strand, within Echvi_0674at 756.281 kb on + strand, within Echvi_0674at 756.282 kb on - strand, within Echvi_0674at 756.286 kb on + strand, within Echvi_0674at 756.286 kb on + strand, within Echvi_0674at 756.286 kb on + strand, within Echvi_0674at 756.287 kb on - strand, within Echvi_0674at 756.287 kb on - strand, within Echvi_0674at 756.287 kb on - strand, within Echvi_0674at 756.287 kb on - strand, within Echvi_0674at 756.289 kb on + strand, within Echvi_0674at 756.289 kb on + strand, within Echvi_0674at 756.289 kb on + strand, within Echvi_0674at 756.289 kb on + strand, within Echvi_0674at 756.289 kb on + strand, within Echvi_0674at 756.290 kb on - strand, within Echvi_0674at 756.322 kb on + strand, within Echvi_0674at 756.322 kb on + strand, within Echvi_0674at 756.325 kb on + strand, within Echvi_0674at 756.325 kb on + strand, within Echvi_0674at 756.325 kb on + strand, within Echvi_0674at 756.326 kb on - strand, within Echvi_0674at 756.326 kb on - strand, within Echvi_0674at 756.326 kb on - strand, within Echvi_0674at 756.326 kb on - strand, within Echvi_0674at 756.339 kb on + strand, within Echvi_0674at 756.340 kb on - strand, within Echvi_0674at 756.394 kb on + strand, within Echvi_0674at 756.395 kb on - strand, within Echvi_0674at 756.395 kb on - strand, within Echvi_0674at 756.428 kb on + strand, within Echvi_0674at 756.429 kb on - strand, within Echvi_0674at 756.429 kb on - strand, within Echvi_0674at 756.439 kb on + strand, within Echvi_0674at 756.439 kb on + strand, within Echvi_0674at 756.440 kb on - strand, within Echvi_0674at 756.440 kb on - strand, within Echvi_0674at 756.440 kb on - strand, within Echvi_0674

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 0.5 mM
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753,715 + Echvi_0670 0.30 -1.0
753,722 + Echvi_0670 0.31 -1.8
753,722 + Echvi_0670 0.31 +0.6
753,722 + Echvi_0670 0.31 +0.0
753,723 - Echvi_0670 0.31 +0.5
753,723 - Echvi_0670 0.31 +2.0
753,723 - Echvi_0670 0.31 -1.9
753,723 - Echvi_0670 0.31 +0.4
753,723 - Echvi_0670 0.31 -0.7
753,724 + Echvi_0670 0.31 -1.0
753,814 - Echvi_0670 0.44 +0.8
753,818 + Echvi_0670 0.44 +0.5
753,819 - Echvi_0670 0.44 +0.5
753,900 + Echvi_0670 0.55 +0.7
753,991 + Echvi_0670 0.68 -0.8
754,039 + Echvi_0670 0.75 -1.0
754,039 + Echvi_0670 0.75 +0.3
754,039 + Echvi_0670 0.75 +0.2
754,039 + Echvi_0670 0.75 -0.7
754,040 - Echvi_0670 0.75 +0.2
754,040 - Echvi_0670 0.75 +0.1
754,040 - Echvi_0670 0.75 -1.1
754,040 - Echvi_0670 0.75 -1.5
754,040 - Echvi_0670 0.75 -0.0
754,041 + Echvi_0670 0.75 -2.7
754,042 - Echvi_0670 0.75 +0.1
754,042 - Echvi_0670 0.75 -0.1
754,043 + Echvi_0670 0.75 -1.5
754,043 + Echvi_0670 0.75 +0.1
754,060 + Echvi_0670 0.77 -1.6
754,062 + Echvi_0670 0.78 -0.1
754,128 + Echvi_0670 0.87 -0.1
754,224 - -1.0
754,328 + Echvi_0671 0.24 -1.4
754,328 + Echvi_0671 0.24 -0.3
754,329 - Echvi_0671 0.24 -0.5
754,341 - Echvi_0671 0.27 +0.3
754,341 - Echvi_0671 0.27 -0.3
754,342 + Echvi_0671 0.27 +0.7
754,342 + Echvi_0671 0.27 +0.7
754,342 + Echvi_0671 0.27 +1.3
754,344 + Echvi_0671 0.28 +0.0
754,344 + Echvi_0671 0.28 -0.5
754,345 - Echvi_0671 0.28 +0.1
754,345 - Echvi_0671 0.28 +0.9
754,345 - Echvi_0671 0.28 -2.0
754,347 + Echvi_0671 0.29 +0.6
754,347 + Echvi_0671 0.29 +1.0
754,348 - Echvi_0671 0.29 +0.5
754,348 - Echvi_0671 0.29 -0.1
754,438 + Echvi_0671 0.51 -0.1
754,438 + Echvi_0671 0.51 -1.5
754,439 - Echvi_0671 0.51 +0.4
754,540 + Echvi_0671 0.77 +0.9
754,540 + Echvi_0671 0.77 -0.1
754,542 + Echvi_0671 0.77 -0.2
754,542 + Echvi_0671 0.77 +0.8
754,542 + Echvi_0671 0.77 +0.1
754,543 - Echvi_0671 0.77 -0.0
754,543 - Echvi_0671 0.77 -0.4
754,543 - Echvi_0671 0.77 -0.3
754,561 + Echvi_0671 0.82 +1.0
754,562 - Echvi_0671 0.82 +0.8
754,562 - Echvi_0671 0.82 +0.4
754,562 - Echvi_0671 0.82 -1.1
754,562 - Echvi_0671 0.82 +1.3
754,619 + -0.7
754,636 + +1.1
754,636 + +0.5
754,637 - +1.4
754,637 - -0.4
754,640 - -0.5
754,650 + -0.0
754,651 - +1.7
754,667 - -0.5
755,409 - -0.3
755,425 + -0.3
755,529 + -0.0
755,547 + -0.0
755,547 + -1.9
755,547 + -1.5
755,548 - +0.7
755,604 + Echvi_0673 0.20 +0.0
755,604 + Echvi_0673 0.20 +0.9
755,605 - Echvi_0673 0.20 +0.2
755,624 - Echvi_0673 0.25 +1.4
755,624 - Echvi_0673 0.25 -0.8
755,624 - Echvi_0673 0.25 +2.3
755,631 + Echvi_0673 0.27 -0.4
755,631 + Echvi_0673 0.27 +0.4
755,719 + Echvi_0673 0.52 +0.3
755,720 - Echvi_0673 0.52 +0.3
755,740 + Echvi_0673 0.58 -0.2
755,742 + Echvi_0673 0.59 +0.0
755,779 + Echvi_0673 0.69 -0.1
755,779 + Echvi_0673 0.69 -1.5
755,779 + Echvi_0673 0.69 -0.2
755,780 - Echvi_0673 0.69 -0.6
755,780 - Echvi_0673 0.69 -0.9
755,780 - Echvi_0673 0.69 -1.4
755,780 - Echvi_0673 0.69 +2.2
755,781 + Echvi_0673 0.69 -0.3
755,782 - Echvi_0673 0.70 -0.2
755,802 + Echvi_0673 0.75 +1.2
755,803 - Echvi_0673 0.76 +0.4
755,834 - Echvi_0673 0.84 -1.7
755,862 + -2.1
755,863 - -0.4
755,920 + +0.8
756,053 + +0.7
756,053 + +0.6
756,053 + +0.1
756,053 + -0.0
756,053 + +0.1
756,054 - +0.7
756,054 - -0.1
756,054 - +0.1
756,055 + +0.3
756,055 + -0.3
756,055 + +3.7
756,055 + -0.4
756,055 + +0.1
756,056 - -0.0
756,056 - -1.2
756,056 - +1.1
756,056 - +0.2
756,056 - +1.0
756,056 - +0.6
756,056 - +1.0
756,056 - +0.0
756,056 - +1.9
756,056 - +0.2
756,111 + Echvi_0674 0.13 -0.2
756,131 + Echvi_0674 0.15 -0.8
756,176 - Echvi_0674 0.20 +0.4
756,218 - Echvi_0674 0.25 +0.4
756,233 + Echvi_0674 0.27 +0.1
756,241 + Echvi_0674 0.28 +0.2
756,241 + Echvi_0674 0.28 -0.1
756,242 - Echvi_0674 0.28 -0.2
756,242 - Echvi_0674 0.28 -0.2
756,242 - Echvi_0674 0.28 +0.6
756,242 - Echvi_0674 0.28 +0.8
756,242 - Echvi_0674 0.28 +3.1
756,242 - Echvi_0674 0.28 -1.4
756,262 + Echvi_0674 0.30 +0.4
756,281 + Echvi_0674 0.33 +0.4
756,282 - Echvi_0674 0.33 -0.3
756,286 + Echvi_0674 0.33 +0.3
756,286 + Echvi_0674 0.33 +0.1
756,286 + Echvi_0674 0.33 +0.1
756,287 - Echvi_0674 0.33 -0.1
756,287 - Echvi_0674 0.33 -0.6
756,287 - Echvi_0674 0.33 +0.4
756,287 - Echvi_0674 0.33 +0.8
756,289 + Echvi_0674 0.33 +0.1
756,289 + Echvi_0674 0.33 +0.0
756,289 + Echvi_0674 0.33 -0.0
756,289 + Echvi_0674 0.33 -1.1
756,289 + Echvi_0674 0.33 +1.0
756,290 - Echvi_0674 0.34 +0.1
756,322 + Echvi_0674 0.37 +0.4
756,322 + Echvi_0674 0.37 -0.1
756,325 + Echvi_0674 0.38 +0.7
756,325 + Echvi_0674 0.38 +0.3
756,325 + Echvi_0674 0.38 +1.5
756,326 - Echvi_0674 0.38 -0.2
756,326 - Echvi_0674 0.38 +0.2
756,326 - Echvi_0674 0.38 -0.8
756,326 - Echvi_0674 0.38 -0.1
756,339 + Echvi_0674 0.39 +1.7
756,340 - Echvi_0674 0.39 -0.1
756,394 + Echvi_0674 0.46 -1.9
756,395 - Echvi_0674 0.46 +0.0
756,395 - Echvi_0674 0.46 +0.2
756,428 + Echvi_0674 0.50 +0.5
756,429 - Echvi_0674 0.50 +0.7
756,429 - Echvi_0674 0.50 -1.4
756,439 + Echvi_0674 0.51 -0.8
756,439 + Echvi_0674 0.51 +0.0
756,440 - Echvi_0674 0.51 +0.9
756,440 - Echvi_0674 0.51 +1.3
756,440 - Echvi_0674 0.51 +0.1

Or see this region's nucleotide sequence