Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0602

Experiment: m.b. Nickel (II) chloride 0.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_0601 and Echvi_0602 are separated by 18 nucleotidesEchvi_0602 and Echvi_0603 overlap by 20 nucleotidesEchvi_0603 and Echvi_0604 are separated by 221 nucleotides Echvi_0601: Echvi_0601 - FKBP-type peptidyl-prolyl cis-trans isomerases 1, at 677,755 to 678,714 _0601 Echvi_0602: Echvi_0602 - hypothetical protein, at 678,733 to 680,112 _0602 Echvi_0603: Echvi_0603 - RNA polymerase sigma factor, sigma-70 family, at 680,093 to 680,641 _0603 Echvi_0604: Echvi_0604 - Predicted redox protein, regulator of disulfide bond formation, at 680,863 to 681,267 _0604 Position (kb) 678 679 680 681Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 677.770 kb on + strandat 677.770 kb on + strandat 677.797 kb on - strandat 677.806 kb on + strandat 677.834 kb on + strandat 677.874 kb on + strand, within Echvi_0601at 677.960 kb on + strand, within Echvi_0601at 677.961 kb on - strand, within Echvi_0601at 677.961 kb on - strand, within Echvi_0601at 677.961 kb on - strand, within Echvi_0601at 677.961 kb on - strand, within Echvi_0601at 677.964 kb on + strand, within Echvi_0601at 677.994 kb on + strand, within Echvi_0601at 677.997 kb on + strand, within Echvi_0601at 678.120 kb on - strand, within Echvi_0601at 678.120 kb on - strand, within Echvi_0601at 678.220 kb on + strand, within Echvi_0601at 678.278 kb on + strand, within Echvi_0601at 678.278 kb on + strand, within Echvi_0601at 678.302 kb on + strand, within Echvi_0601at 678.314 kb on + strand, within Echvi_0601at 678.315 kb on - strand, within Echvi_0601at 678.369 kb on + strand, within Echvi_0601at 678.398 kb on + strand, within Echvi_0601at 678.399 kb on - strand, within Echvi_0601at 678.399 kb on - strand, within Echvi_0601at 678.402 kb on + strand, within Echvi_0601at 678.403 kb on - strand, within Echvi_0601at 678.403 kb on - strand, within Echvi_0601at 678.403 kb on - strand, within Echvi_0601at 678.403 kb on - strand, within Echvi_0601at 678.432 kb on + strand, within Echvi_0601at 678.433 kb on - strand, within Echvi_0601at 678.476 kb on + strand, within Echvi_0601at 678.539 kb on + strand, within Echvi_0601at 678.539 kb on + strand, within Echvi_0601at 678.542 kb on + strand, within Echvi_0601at 678.542 kb on + strand, within Echvi_0601at 678.542 kb on + strand, within Echvi_0601at 678.543 kb on - strand, within Echvi_0601at 678.590 kb on + strand, within Echvi_0601at 678.590 kb on + strand, within Echvi_0601at 678.591 kb on - strand, within Echvi_0601at 679.345 kb on + strand, within Echvi_0602at 680.117 kb on + strandat 680.126 kb on + strandat 680.126 kb on + strandat 680.172 kb on + strand, within Echvi_0603at 680.173 kb on - strand, within Echvi_0603at 680.227 kb on + strand, within Echvi_0603at 680.227 kb on + strand, within Echvi_0603at 680.228 kb on - strand, within Echvi_0603at 680.228 kb on - strand, within Echvi_0603at 680.229 kb on + strand, within Echvi_0603at 680.229 kb on + strand, within Echvi_0603at 680.229 kb on + strand, within Echvi_0603at 680.230 kb on - strand, within Echvi_0603at 680.230 kb on - strand, within Echvi_0603at 680.248 kb on + strand, within Echvi_0603at 680.248 kb on + strand, within Echvi_0603at 680.248 kb on + strand, within Echvi_0603at 680.249 kb on - strand, within Echvi_0603at 680.260 kb on + strand, within Echvi_0603at 680.261 kb on - strand, within Echvi_0603at 680.337 kb on + strand, within Echvi_0603at 680.385 kb on - strand, within Echvi_0603at 680.385 kb on - strand, within Echvi_0603at 680.401 kb on - strand, within Echvi_0603at 680.413 kb on + strand, within Echvi_0603at 680.414 kb on - strand, within Echvi_0603at 680.472 kb on - strand, within Echvi_0603at 680.492 kb on - strand, within Echvi_0603at 680.498 kb on - strand, within Echvi_0603at 680.557 kb on + strand, within Echvi_0603at 680.557 kb on + strand, within Echvi_0603at 680.558 kb on - strand, within Echvi_0603at 680.568 kb on + strand, within Echvi_0603at 680.568 kb on + strand, within Echvi_0603at 680.578 kb on + strand, within Echvi_0603at 680.605 kb on + strandat 680.631 kb on + strandat 680.631 kb on + strandat 680.631 kb on + strandat 680.631 kb on + strandat 680.654 kb on + strandat 680.654 kb on + strandat 680.661 kb on + strandat 680.661 kb on + strandat 680.662 kb on - strandat 680.662 kb on - strandat 680.672 kb on - strandat 680.686 kb on - strandat 680.700 kb on - strandat 680.700 kb on - strandat 680.712 kb on - strandat 680.734 kb on + strandat 680.766 kb on - strandat 680.790 kb on + strandat 680.790 kb on + strandat 680.791 kb on - strandat 680.843 kb on + strandat 680.843 kb on + strandat 681.022 kb on - strand, within Echvi_0604at 681.061 kb on - strand, within Echvi_0604at 681.086 kb on - strand, within Echvi_0604

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 0.5 mM
remove
677,770 + -0.6
677,770 + -1.0
677,797 - +1.1
677,806 + -0.1
677,834 + -0.1
677,874 + Echvi_0601 0.12 -1.3
677,960 + Echvi_0601 0.21 +0.6
677,961 - Echvi_0601 0.21 -0.2
677,961 - Echvi_0601 0.21 -0.5
677,961 - Echvi_0601 0.21 +0.6
677,961 - Echvi_0601 0.21 -0.4
677,964 + Echvi_0601 0.22 -0.5
677,994 + Echvi_0601 0.25 +0.3
677,997 + Echvi_0601 0.25 +0.3
678,120 - Echvi_0601 0.38 -1.1
678,120 - Echvi_0601 0.38 +2.8
678,220 + Echvi_0601 0.48 +0.0
678,278 + Echvi_0601 0.54 -0.1
678,278 + Echvi_0601 0.54 +1.3
678,302 + Echvi_0601 0.57 +0.5
678,314 + Echvi_0601 0.58 -0.6
678,315 - Echvi_0601 0.58 -1.2
678,369 + Echvi_0601 0.64 +0.4
678,398 + Echvi_0601 0.67 +1.7
678,399 - Echvi_0601 0.67 -1.2
678,399 - Echvi_0601 0.67 -0.9
678,402 + Echvi_0601 0.67 -0.3
678,403 - Echvi_0601 0.68 +0.7
678,403 - Echvi_0601 0.68 +0.5
678,403 - Echvi_0601 0.68 -0.6
678,403 - Echvi_0601 0.68 +0.5
678,432 + Echvi_0601 0.71 +0.4
678,433 - Echvi_0601 0.71 -0.2
678,476 + Echvi_0601 0.75 -0.1
678,539 + Echvi_0601 0.82 -1.6
678,539 + Echvi_0601 0.82 -0.7
678,542 + Echvi_0601 0.82 -1.1
678,542 + Echvi_0601 0.82 +0.8
678,542 + Echvi_0601 0.82 -0.3
678,543 - Echvi_0601 0.82 +0.6
678,590 + Echvi_0601 0.87 +0.8
678,590 + Echvi_0601 0.87 +0.3
678,591 - Echvi_0601 0.87 +0.1
679,345 + Echvi_0602 0.44 -0.9
680,117 + -0.1
680,126 + -0.5
680,126 + -0.3
680,172 + Echvi_0603 0.14 -0.7
680,173 - Echvi_0603 0.15 -0.0
680,227 + Echvi_0603 0.24 +0.9
680,227 + Echvi_0603 0.24 +0.6
680,228 - Echvi_0603 0.25 +0.1
680,228 - Echvi_0603 0.25 -0.6
680,229 + Echvi_0603 0.25 -0.7
680,229 + Echvi_0603 0.25 -0.0
680,229 + Echvi_0603 0.25 -1.4
680,230 - Echvi_0603 0.25 -1.6
680,230 - Echvi_0603 0.25 -0.5
680,248 + Echvi_0603 0.28 +0.8
680,248 + Echvi_0603 0.28 +0.5
680,248 + Echvi_0603 0.28 +1.3
680,249 - Echvi_0603 0.28 +1.8
680,260 + Echvi_0603 0.30 -0.0
680,261 - Echvi_0603 0.31 +0.2
680,337 + Echvi_0603 0.44 -0.5
680,385 - Echvi_0603 0.53 -2.2
680,385 - Echvi_0603 0.53 +0.9
680,401 - Echvi_0603 0.56 -0.6
680,413 + Echvi_0603 0.58 +0.3
680,414 - Echvi_0603 0.58 -0.3
680,472 - Echvi_0603 0.69 +0.0
680,492 - Echvi_0603 0.73 +1.0
680,498 - Echvi_0603 0.74 +0.3
680,557 + Echvi_0603 0.85 +0.3
680,557 + Echvi_0603 0.85 +0.2
680,558 - Echvi_0603 0.85 +0.0
680,568 + Echvi_0603 0.87 +0.5
680,568 + Echvi_0603 0.87 +1.1
680,578 + Echvi_0603 0.88 +2.0
680,605 + -0.2
680,631 + -0.6
680,631 + -0.1
680,631 + -0.8
680,631 + +0.5
680,654 + +1.2
680,654 + -0.2
680,661 + +0.4
680,661 + -0.6
680,662 - -2.3
680,662 - +0.0
680,672 - +0.5
680,686 - -3.0
680,700 - -1.5
680,700 - +1.6
680,712 - -0.3
680,734 + -0.9
680,766 - -0.1
680,790 + -1.2
680,790 + +0.3
680,791 - +1.1
680,843 + -0.6
680,843 + -0.5
681,022 - Echvi_0604 0.39 -0.3
681,061 - Echvi_0604 0.49 -0.1
681,086 - Echvi_0604 0.55 -0.3

Or see this region's nucleotide sequence