Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0500

Experiment: m.b. Nickel (II) chloride 0.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_0499 and Echvi_0500 are separated by 282 nucleotidesEchvi_0500 and Echvi_0501 are separated by 72 nucleotidesEchvi_0501 and Echvi_0502 are separated by 318 nucleotides Echvi_0499: Echvi_0499 - Glycosyl hydrolases family 43., at 555,918 to 556,859 _0499 Echvi_0500: Echvi_0500 - Beta-xylosidase, at 557,142 to 558,122 _0500 Echvi_0501: Echvi_0501 - ADP-ribose pyrophosphatase, at 558,195 to 558,647 _0501 Echvi_0502: Echvi_0502 - Galactose mutarotase and related enzymes, at 558,966 to 560,126 _0502 Position (kb) 557 558 559Strain fitness (log2 ratio) -2 -1 0 1 2at 556.209 kb on + strand, within Echvi_0499at 556.210 kb on - strand, within Echvi_0499at 556.312 kb on - strand, within Echvi_0499at 556.332 kb on + strand, within Echvi_0499at 556.332 kb on + strand, within Echvi_0499at 556.332 kb on + strand, within Echvi_0499at 556.332 kb on + strand, within Echvi_0499at 556.332 kb on + strand, within Echvi_0499at 556.332 kb on + strand, within Echvi_0499at 556.332 kb on + strand, within Echvi_0499at 556.333 kb on - strand, within Echvi_0499at 556.334 kb on + strand, within Echvi_0499at 556.334 kb on + strand, within Echvi_0499at 556.335 kb on - strand, within Echvi_0499at 556.352 kb on + strand, within Echvi_0499at 556.352 kb on + strand, within Echvi_0499at 556.353 kb on - strand, within Echvi_0499at 556.355 kb on + strand, within Echvi_0499at 556.402 kb on - strand, within Echvi_0499at 556.409 kb on + strand, within Echvi_0499at 556.409 kb on + strand, within Echvi_0499at 556.409 kb on + strand, within Echvi_0499at 556.410 kb on - strand, within Echvi_0499at 556.410 kb on - strand, within Echvi_0499at 556.416 kb on + strand, within Echvi_0499at 556.416 kb on + strand, within Echvi_0499at 556.416 kb on + strand, within Echvi_0499at 556.416 kb on + strand, within Echvi_0499at 556.417 kb on - strand, within Echvi_0499at 556.417 kb on - strand, within Echvi_0499at 556.421 kb on + strand, within Echvi_0499at 556.422 kb on - strand, within Echvi_0499at 556.422 kb on - strand, within Echvi_0499at 556.521 kb on + strand, within Echvi_0499at 556.522 kb on - strand, within Echvi_0499at 556.522 kb on - strand, within Echvi_0499at 556.697 kb on + strand, within Echvi_0499at 556.701 kb on + strand, within Echvi_0499at 556.701 kb on + strand, within Echvi_0499at 556.701 kb on + strand, within Echvi_0499at 556.702 kb on - strand, within Echvi_0499at 556.839 kb on - strandat 556.862 kb on + strandat 556.862 kb on + strandat 556.863 kb on - strandat 556.920 kb on + strandat 556.921 kb on - strandat 557.016 kb on + strandat 557.017 kb on - strandat 557.017 kb on - strandat 557.180 kb on - strandat 557.265 kb on + strand, within Echvi_0500at 557.313 kb on + strand, within Echvi_0500at 557.313 kb on + strand, within Echvi_0500at 557.317 kb on + strand, within Echvi_0500at 557.318 kb on - strand, within Echvi_0500at 557.318 kb on - strand, within Echvi_0500at 557.318 kb on - strand, within Echvi_0500at 557.318 kb on - strand, within Echvi_0500at 557.318 kb on - strand, within Echvi_0500at 557.318 kb on - strand, within Echvi_0500at 557.318 kb on - strand, within Echvi_0500at 557.340 kb on - strand, within Echvi_0500at 557.353 kb on - strand, within Echvi_0500at 557.473 kb on + strand, within Echvi_0500at 557.489 kb on + strand, within Echvi_0500at 557.489 kb on + strand, within Echvi_0500at 557.570 kb on - strand, within Echvi_0500at 557.570 kb on - strand, within Echvi_0500at 557.706 kb on - strand, within Echvi_0500at 557.706 kb on - strand, within Echvi_0500at 557.715 kb on + strand, within Echvi_0500at 557.715 kb on + strand, within Echvi_0500at 557.716 kb on - strand, within Echvi_0500at 557.716 kb on - strand, within Echvi_0500at 557.718 kb on + strand, within Echvi_0500at 557.719 kb on - strand, within Echvi_0500at 557.736 kb on - strand, within Echvi_0500at 557.738 kb on + strand, within Echvi_0500at 557.738 kb on + strand, within Echvi_0500at 557.738 kb on + strand, within Echvi_0500at 557.738 kb on + strand, within Echvi_0500at 557.739 kb on - strand, within Echvi_0500at 557.739 kb on - strand, within Echvi_0500at 557.739 kb on - strand, within Echvi_0500at 557.767 kb on - strand, within Echvi_0500at 557.781 kb on - strand, within Echvi_0500at 557.824 kb on - strand, within Echvi_0500at 557.826 kb on + strand, within Echvi_0500at 557.835 kb on + strand, within Echvi_0500at 557.835 kb on + strand, within Echvi_0500at 557.835 kb on + strand, within Echvi_0500at 557.836 kb on - strand, within Echvi_0500at 557.836 kb on - strand, within Echvi_0500at 557.843 kb on + strand, within Echvi_0500at 557.964 kb on + strand, within Echvi_0500at 557.979 kb on + strand, within Echvi_0500at 557.979 kb on + strand, within Echvi_0500at 557.980 kb on - strand, within Echvi_0500at 557.999 kb on + strand, within Echvi_0500at 558.000 kb on - strand, within Echvi_0500at 558.000 kb on - strand, within Echvi_0500at 558.054 kb on + strandat 558.057 kb on + strandat 558.058 kb on - strandat 558.072 kb on - strandat 558.104 kb on + strandat 558.120 kb on + strandat 558.131 kb on - strandat 558.209 kb on - strandat 558.214 kb on + strandat 558.214 kb on + strandat 558.214 kb on + strandat 558.293 kb on - strand, within Echvi_0501at 558.359 kb on - strand, within Echvi_0501at 558.454 kb on - strand, within Echvi_0501at 558.461 kb on - strand, within Echvi_0501at 558.551 kb on - strand, within Echvi_0501at 558.551 kb on - strand, within Echvi_0501at 558.585 kb on + strand, within Echvi_0501at 558.585 kb on + strand, within Echvi_0501at 558.586 kb on - strand, within Echvi_0501at 558.586 kb on - strand, within Echvi_0501at 558.618 kb on + strandat 558.663 kb on - strandat 558.913 kb on + strandat 558.914 kb on - strandat 558.914 kb on - strandat 558.922 kb on + strandat 558.923 kb on - strandat 558.961 kb on + strandat 558.962 kb on - strandat 558.985 kb on + strandat 558.985 kb on + strandat 559.003 kb on + strandat 559.003 kb on + strandat 559.003 kb on + strandat 559.003 kb on + strandat 559.004 kb on - strandat 559.090 kb on + strand, within Echvi_0502at 559.090 kb on + strand, within Echvi_0502at 559.093 kb on + strand, within Echvi_0502at 559.093 kb on + strand, within Echvi_0502at 559.094 kb on - strand, within Echvi_0502at 559.102 kb on + strand, within Echvi_0502at 559.102 kb on + strand, within Echvi_0502at 559.102 kb on + strand, within Echvi_0502at 559.103 kb on - strand, within Echvi_0502at 559.122 kb on - strand, within Echvi_0502

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 0.5 mM
remove
556,209 + Echvi_0499 0.31 -0.5
556,210 - Echvi_0499 0.31 +0.7
556,312 - Echvi_0499 0.42 -2.0
556,332 + Echvi_0499 0.44 -0.9
556,332 + Echvi_0499 0.44 -1.2
556,332 + Echvi_0499 0.44 +1.4
556,332 + Echvi_0499 0.44 +0.7
556,332 + Echvi_0499 0.44 -0.4
556,332 + Echvi_0499 0.44 -0.6
556,332 + Echvi_0499 0.44 +0.4
556,333 - Echvi_0499 0.44 -0.9
556,334 + Echvi_0499 0.44 +2.7
556,334 + Echvi_0499 0.44 +0.5
556,335 - Echvi_0499 0.44 +0.4
556,352 + Echvi_0499 0.46 -0.5
556,352 + Echvi_0499 0.46 -0.2
556,353 - Echvi_0499 0.46 -1.6
556,355 + Echvi_0499 0.46 +2.3
556,402 - Echvi_0499 0.51 +2.1
556,409 + Echvi_0499 0.52 -0.2
556,409 + Echvi_0499 0.52 +0.1
556,409 + Echvi_0499 0.52 +0.6
556,410 - Echvi_0499 0.52 -0.8
556,410 - Echvi_0499 0.52 +0.1
556,416 + Echvi_0499 0.53 -0.3
556,416 + Echvi_0499 0.53 -0.1
556,416 + Echvi_0499 0.53 -0.2
556,416 + Echvi_0499 0.53 -0.7
556,417 - Echvi_0499 0.53 -0.0
556,417 - Echvi_0499 0.53 +0.7
556,421 + Echvi_0499 0.53 +1.2
556,422 - Echvi_0499 0.54 +0.7
556,422 - Echvi_0499 0.54 -0.4
556,521 + Echvi_0499 0.64 +0.1
556,522 - Echvi_0499 0.64 +0.3
556,522 - Echvi_0499 0.64 +0.1
556,697 + Echvi_0499 0.83 +0.8
556,701 + Echvi_0499 0.83 +0.4
556,701 + Echvi_0499 0.83 +0.9
556,701 + Echvi_0499 0.83 +0.2
556,702 - Echvi_0499 0.83 +1.1
556,839 - +0.3
556,862 + -0.2
556,862 + -0.8
556,863 - +0.0
556,920 + -1.2
556,921 - -2.0
557,016 + -1.3
557,017 - +0.3
557,017 - +0.2
557,180 - -0.4
557,265 + Echvi_0500 0.13 -0.3
557,313 + Echvi_0500 0.17 -0.3
557,313 + Echvi_0500 0.17 -0.3
557,317 + Echvi_0500 0.18 -0.8
557,318 - Echvi_0500 0.18 -0.5
557,318 - Echvi_0500 0.18 -2.3
557,318 - Echvi_0500 0.18 -0.3
557,318 - Echvi_0500 0.18 +0.3
557,318 - Echvi_0500 0.18 -1.9
557,318 - Echvi_0500 0.18 -0.7
557,318 - Echvi_0500 0.18 +1.2
557,340 - Echvi_0500 0.20 -0.3
557,353 - Echvi_0500 0.22 -1.5
557,473 + Echvi_0500 0.34 -2.5
557,489 + Echvi_0500 0.35 -1.3
557,489 + Echvi_0500 0.35 +0.3
557,570 - Echvi_0500 0.44 +0.1
557,570 - Echvi_0500 0.44 -0.2
557,706 - Echvi_0500 0.57 +0.3
557,706 - Echvi_0500 0.57 +0.4
557,715 + Echvi_0500 0.58 -1.3
557,715 + Echvi_0500 0.58 -0.3
557,716 - Echvi_0500 0.59 -0.3
557,716 - Echvi_0500 0.59 -0.4
557,718 + Echvi_0500 0.59 -0.4
557,719 - Echvi_0500 0.59 -0.9
557,736 - Echvi_0500 0.61 -0.6
557,738 + Echvi_0500 0.61 -0.7
557,738 + Echvi_0500 0.61 -0.7
557,738 + Echvi_0500 0.61 +1.2
557,738 + Echvi_0500 0.61 -0.9
557,739 - Echvi_0500 0.61 -0.2
557,739 - Echvi_0500 0.61 -0.4
557,739 - Echvi_0500 0.61 -0.9
557,767 - Echvi_0500 0.64 +0.4
557,781 - Echvi_0500 0.65 -0.6
557,824 - Echvi_0500 0.70 +0.4
557,826 + Echvi_0500 0.70 +0.0
557,835 + Echvi_0500 0.71 -0.5
557,835 + Echvi_0500 0.71 -0.4
557,835 + Echvi_0500 0.71 +1.0
557,836 - Echvi_0500 0.71 -0.3
557,836 - Echvi_0500 0.71 +0.3
557,843 + Echvi_0500 0.71 -0.4
557,964 + Echvi_0500 0.84 -0.3
557,979 + Echvi_0500 0.85 +0.1
557,979 + Echvi_0500 0.85 -1.6
557,980 - Echvi_0500 0.85 +0.6
557,999 + Echvi_0500 0.87 -0.8
558,000 - Echvi_0500 0.87 -0.5
558,000 - Echvi_0500 0.87 +0.2
558,054 + +0.6
558,057 + +0.2
558,058 - +0.7
558,072 - -0.5
558,104 + +1.5
558,120 + +1.0
558,131 - -0.9
558,209 - +1.7
558,214 + +1.2
558,214 + -1.6
558,214 + -0.3
558,293 - Echvi_0501 0.22 +0.4
558,359 - Echvi_0501 0.36 -0.3
558,454 - Echvi_0501 0.57 +0.3
558,461 - Echvi_0501 0.59 -0.0
558,551 - Echvi_0501 0.79 +0.7
558,551 - Echvi_0501 0.79 +0.2
558,585 + Echvi_0501 0.86 -0.4
558,585 + Echvi_0501 0.86 -0.2
558,586 - Echvi_0501 0.86 +0.5
558,586 - Echvi_0501 0.86 +0.5
558,618 + +0.6
558,663 - -0.5
558,913 + -0.0
558,914 - -0.9
558,914 - +1.0
558,922 + -0.0
558,923 - +0.6
558,961 + -0.7
558,962 - +0.4
558,985 + -1.3
558,985 + -0.3
559,003 + +1.2
559,003 + -0.4
559,003 + +0.3
559,003 + -0.3
559,004 - -1.5
559,090 + Echvi_0502 0.11 -0.3
559,090 + Echvi_0502 0.11 -0.3
559,093 + Echvi_0502 0.11 +0.8
559,093 + Echvi_0502 0.11 -1.4
559,094 - Echvi_0502 0.11 +1.1
559,102 + Echvi_0502 0.12 +2.7
559,102 + Echvi_0502 0.12 +0.1
559,102 + Echvi_0502 0.12 +0.6
559,103 - Echvi_0502 0.12 +0.3
559,122 - Echvi_0502 0.13 +0.7

Or see this region's nucleotide sequence