Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0496

Experiment: m.b. Nickel (II) chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0495 and Echvi_0496 are separated by 18 nucleotidesEchvi_0496 and Echvi_0497 are separated by 198 nucleotides Echvi_0495: Echvi_0495 - Beta-xylosidase, at 551,303 to 552,301 _0495 Echvi_0496: Echvi_0496 - Beta-xylosidase, at 552,320 to 553,318 _0496 Echvi_0497: Echvi_0497 - Beta-xylosidase, at 553,517 to 554,560 _0497 Position (kb) 552 553 554Strain fitness (log2 ratio) -2 -1 0 1 2at 551.362 kb on + strandat 551.541 kb on + strand, within Echvi_0495at 551.541 kb on + strand, within Echvi_0495at 551.684 kb on + strand, within Echvi_0495at 551.687 kb on + strand, within Echvi_0495at 551.687 kb on + strand, within Echvi_0495at 551.688 kb on - strand, within Echvi_0495at 551.785 kb on + strand, within Echvi_0495at 551.787 kb on + strand, within Echvi_0495at 551.787 kb on + strand, within Echvi_0495at 551.788 kb on - strand, within Echvi_0495at 551.788 kb on - strand, within Echvi_0495at 551.900 kb on + strand, within Echvi_0495at 551.900 kb on + strand, within Echvi_0495at 551.900 kb on + strand, within Echvi_0495at 551.901 kb on - strand, within Echvi_0495at 551.901 kb on - strand, within Echvi_0495at 551.982 kb on + strand, within Echvi_0495at 551.983 kb on - strand, within Echvi_0495at 551.986 kb on - strand, within Echvi_0495at 551.986 kb on - strand, within Echvi_0495at 551.995 kb on + strand, within Echvi_0495at 551.997 kb on + strand, within Echvi_0495at 551.997 kb on + strand, within Echvi_0495at 551.997 kb on + strand, within Echvi_0495at 551.998 kb on - strand, within Echvi_0495at 552.133 kb on + strand, within Echvi_0495at 552.133 kb on + strand, within Echvi_0495at 552.134 kb on - strand, within Echvi_0495at 552.134 kb on - strand, within Echvi_0495at 552.134 kb on - strand, within Echvi_0495at 552.136 kb on - strand, within Echvi_0495at 552.136 kb on - strand, within Echvi_0495at 552.136 kb on - strand, within Echvi_0495at 552.136 kb on - strand, within Echvi_0495at 552.136 kb on - strand, within Echvi_0495at 552.136 kb on - strand, within Echvi_0495at 552.138 kb on + strand, within Echvi_0495at 552.138 kb on + strand, within Echvi_0495at 552.139 kb on - strand, within Echvi_0495at 552.139 kb on - strand, within Echvi_0495at 552.139 kb on - strand, within Echvi_0495at 552.164 kb on + strand, within Echvi_0495at 552.166 kb on + strand, within Echvi_0495at 552.167 kb on - strand, within Echvi_0495at 552.324 kb on + strandat 552.324 kb on + strandat 552.325 kb on - strandat 552.387 kb on + strandat 552.453 kb on + strand, within Echvi_0496at 552.453 kb on + strand, within Echvi_0496at 552.453 kb on + strand, within Echvi_0496at 552.454 kb on - strand, within Echvi_0496at 552.462 kb on + strand, within Echvi_0496at 552.463 kb on - strand, within Echvi_0496at 552.476 kb on - strand, within Echvi_0496at 552.502 kb on + strand, within Echvi_0496at 552.571 kb on + strand, within Echvi_0496at 552.572 kb on - strand, within Echvi_0496at 552.577 kb on - strand, within Echvi_0496at 552.618 kb on + strand, within Echvi_0496at 552.618 kb on + strand, within Echvi_0496at 552.618 kb on + strand, within Echvi_0496at 552.619 kb on - strand, within Echvi_0496at 552.619 kb on - strand, within Echvi_0496at 552.620 kb on + strand, within Echvi_0496at 552.709 kb on + strand, within Echvi_0496at 552.709 kb on + strand, within Echvi_0496at 552.709 kb on + strand, within Echvi_0496at 552.709 kb on + strand, within Echvi_0496at 552.710 kb on - strand, within Echvi_0496at 552.710 kb on - strand, within Echvi_0496at 552.718 kb on + strand, within Echvi_0496at 552.719 kb on - strand, within Echvi_0496at 552.729 kb on + strand, within Echvi_0496at 552.730 kb on - strand, within Echvi_0496at 552.730 kb on - strand, within Echvi_0496at 552.732 kb on + strand, within Echvi_0496at 552.733 kb on - strand, within Echvi_0496at 552.733 kb on - strand, within Echvi_0496at 552.733 kb on - strand, within Echvi_0496at 552.733 kb on - strand, within Echvi_0496at 552.929 kb on - strand, within Echvi_0496at 552.929 kb on - strand, within Echvi_0496at 552.930 kb on + strand, within Echvi_0496at 552.930 kb on + strand, within Echvi_0496at 552.931 kb on - strand, within Echvi_0496at 552.931 kb on - strand, within Echvi_0496at 552.936 kb on + strand, within Echvi_0496at 552.936 kb on + strand, within Echvi_0496at 552.936 kb on + strand, within Echvi_0496at 552.936 kb on + strand, within Echvi_0496at 552.936 kb on + strand, within Echvi_0496at 552.936 kb on + strand, within Echvi_0496at 552.937 kb on - strand, within Echvi_0496at 552.939 kb on + strand, within Echvi_0496at 552.940 kb on - strand, within Echvi_0496at 552.943 kb on + strand, within Echvi_0496at 552.944 kb on - strand, within Echvi_0496at 552.944 kb on - strand, within Echvi_0496at 552.972 kb on + strand, within Echvi_0496at 552.973 kb on - strand, within Echvi_0496at 553.081 kb on + strand, within Echvi_0496at 553.082 kb on - strand, within Echvi_0496at 553.119 kb on + strand, within Echvi_0496at 553.167 kb on + strand, within Echvi_0496at 553.167 kb on + strand, within Echvi_0496at 553.167 kb on + strand, within Echvi_0496at 553.168 kb on - strand, within Echvi_0496at 553.212 kb on + strand, within Echvi_0496at 553.212 kb on + strand, within Echvi_0496at 553.212 kb on + strand, within Echvi_0496at 553.213 kb on - strand, within Echvi_0496at 553.213 kb on - strand, within Echvi_0496at 553.233 kb on + strandat 553.234 kb on - strandat 553.234 kb on - strandat 553.234 kb on - strandat 553.268 kb on - strandat 553.311 kb on - strandat 553.326 kb on + strandat 553.346 kb on - strandat 553.349 kb on - strandat 553.349 kb on - strandat 553.379 kb on + strandat 553.466 kb on + strandat 553.466 kb on + strandat 553.466 kb on + strandat 553.467 kb on - strandat 553.467 kb on - strandat 553.562 kb on + strandat 553.563 kb on - strandat 553.600 kb on + strandat 553.601 kb on - strandat 553.667 kb on - strand, within Echvi_0497at 553.669 kb on + strand, within Echvi_0497at 553.669 kb on + strand, within Echvi_0497at 553.670 kb on - strand, within Echvi_0497at 553.683 kb on + strand, within Echvi_0497at 553.683 kb on + strand, within Echvi_0497at 553.684 kb on - strand, within Echvi_0497at 553.698 kb on + strand, within Echvi_0497at 553.708 kb on - strand, within Echvi_0497at 553.708 kb on - strand, within Echvi_0497at 553.736 kb on + strand, within Echvi_0497at 553.783 kb on - strand, within Echvi_0497at 553.783 kb on - strand, within Echvi_0497at 553.787 kb on - strand, within Echvi_0497at 553.795 kb on - strand, within Echvi_0497at 553.799 kb on - strand, within Echvi_0497at 553.876 kb on + strand, within Echvi_0497at 553.886 kb on - strand, within Echvi_0497at 553.908 kb on + strand, within Echvi_0497at 553.950 kb on + strand, within Echvi_0497at 553.950 kb on + strand, within Echvi_0497at 553.951 kb on - strand, within Echvi_0497at 553.951 kb on - strand, within Echvi_0497at 553.951 kb on - strand, within Echvi_0497at 553.951 kb on - strand, within Echvi_0497at 554.057 kb on - strand, within Echvi_0497at 554.071 kb on - strand, within Echvi_0497at 554.146 kb on + strand, within Echvi_0497at 554.146 kb on + strand, within Echvi_0497at 554.146 kb on + strand, within Echvi_0497at 554.146 kb on + strand, within Echvi_0497at 554.147 kb on - strand, within Echvi_0497at 554.160 kb on - strand, within Echvi_0497

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 0.5 mM
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551,362 + -0.7
551,541 + Echvi_0495 0.24 +1.0
551,541 + Echvi_0495 0.24 +2.0
551,684 + Echvi_0495 0.38 +1.7
551,687 + Echvi_0495 0.38 -0.2
551,687 + Echvi_0495 0.38 +0.1
551,688 - Echvi_0495 0.39 -0.0
551,785 + Echvi_0495 0.48 -0.0
551,787 + Echvi_0495 0.48 -0.6
551,787 + Echvi_0495 0.48 -1.5
551,788 - Echvi_0495 0.49 +0.3
551,788 - Echvi_0495 0.49 -1.8
551,900 + Echvi_0495 0.60 +0.1
551,900 + Echvi_0495 0.60 -1.5
551,900 + Echvi_0495 0.60 -2.7
551,901 - Echvi_0495 0.60 -0.3
551,901 - Echvi_0495 0.60 +1.6
551,982 + Echvi_0495 0.68 -0.6
551,983 - Echvi_0495 0.68 +0.2
551,986 - Echvi_0495 0.68 -0.6
551,986 - Echvi_0495 0.68 +0.3
551,995 + Echvi_0495 0.69 -0.9
551,997 + Echvi_0495 0.69 +0.2
551,997 + Echvi_0495 0.69 +0.1
551,997 + Echvi_0495 0.69 -0.5
551,998 - Echvi_0495 0.70 -0.4
552,133 + Echvi_0495 0.83 -1.0
552,133 + Echvi_0495 0.83 +0.4
552,134 - Echvi_0495 0.83 +0.5
552,134 - Echvi_0495 0.83 -0.9
552,134 - Echvi_0495 0.83 +0.1
552,136 - Echvi_0495 0.83 +0.7
552,136 - Echvi_0495 0.83 -1.4
552,136 - Echvi_0495 0.83 -1.0
552,136 - Echvi_0495 0.83 -1.4
552,136 - Echvi_0495 0.83 -0.8
552,136 - Echvi_0495 0.83 +0.7
552,138 + Echvi_0495 0.84 +0.8
552,138 + Echvi_0495 0.84 +1.3
552,139 - Echvi_0495 0.84 -0.8
552,139 - Echvi_0495 0.84 +1.0
552,139 - Echvi_0495 0.84 -0.9
552,164 + Echvi_0495 0.86 -1.7
552,166 + Echvi_0495 0.86 -0.4
552,167 - Echvi_0495 0.86 -0.8
552,324 + +1.1
552,324 + +0.2
552,325 - -0.8
552,387 + -0.8
552,453 + Echvi_0496 0.13 +2.4
552,453 + Echvi_0496 0.13 -1.0
552,453 + Echvi_0496 0.13 +2.0
552,454 - Echvi_0496 0.13 -0.2
552,462 + Echvi_0496 0.14 +0.9
552,463 - Echvi_0496 0.14 +0.8
552,476 - Echvi_0496 0.16 +0.4
552,502 + Echvi_0496 0.18 -0.1
552,571 + Echvi_0496 0.25 -0.5
552,572 - Echvi_0496 0.25 +0.2
552,577 - Echvi_0496 0.26 +0.9
552,618 + Echvi_0496 0.30 -0.7
552,618 + Echvi_0496 0.30 -0.4
552,618 + Echvi_0496 0.30 -0.5
552,619 - Echvi_0496 0.30 +1.3
552,619 - Echvi_0496 0.30 -0.4
552,620 + Echvi_0496 0.30 +0.3
552,709 + Echvi_0496 0.39 +0.3
552,709 + Echvi_0496 0.39 -0.3
552,709 + Echvi_0496 0.39 -0.6
552,709 + Echvi_0496 0.39 +0.0
552,710 - Echvi_0496 0.39 -0.1
552,710 - Echvi_0496 0.39 -1.4
552,718 + Echvi_0496 0.40 +0.5
552,719 - Echvi_0496 0.40 -0.3
552,729 + Echvi_0496 0.41 +0.3
552,730 - Echvi_0496 0.41 -2.2
552,730 - Echvi_0496 0.41 -0.0
552,732 + Echvi_0496 0.41 -0.8
552,733 - Echvi_0496 0.41 +0.7
552,733 - Echvi_0496 0.41 +0.5
552,733 - Echvi_0496 0.41 -2.2
552,733 - Echvi_0496 0.41 -1.2
552,929 - Echvi_0496 0.61 -0.0
552,929 - Echvi_0496 0.61 -1.2
552,930 + Echvi_0496 0.61 +0.0
552,930 + Echvi_0496 0.61 +0.5
552,931 - Echvi_0496 0.61 -0.4
552,931 - Echvi_0496 0.61 -0.7
552,936 + Echvi_0496 0.62 -2.0
552,936 + Echvi_0496 0.62 -0.3
552,936 + Echvi_0496 0.62 -0.5
552,936 + Echvi_0496 0.62 +0.2
552,936 + Echvi_0496 0.62 -0.9
552,936 + Echvi_0496 0.62 -1.2
552,937 - Echvi_0496 0.62 +0.2
552,939 + Echvi_0496 0.62 -0.9
552,940 - Echvi_0496 0.62 -0.8
552,943 + Echvi_0496 0.62 -1.7
552,944 - Echvi_0496 0.62 +1.0
552,944 - Echvi_0496 0.62 +0.4
552,972 + Echvi_0496 0.65 -0.8
552,973 - Echvi_0496 0.65 -0.6
553,081 + Echvi_0496 0.76 +1.2
553,082 - Echvi_0496 0.76 -1.0
553,119 + Echvi_0496 0.80 +0.5
553,167 + Echvi_0496 0.85 +0.6
553,167 + Echvi_0496 0.85 +0.7
553,167 + Echvi_0496 0.85 -0.0
553,168 - Echvi_0496 0.85 -0.2
553,212 + Echvi_0496 0.89 -0.7
553,212 + Echvi_0496 0.89 +1.5
553,212 + Echvi_0496 0.89 -1.0
553,213 - Echvi_0496 0.89 +1.0
553,213 - Echvi_0496 0.89 +0.3
553,233 + +1.4
553,234 - -2.1
553,234 - +1.8
553,234 - -0.9
553,268 - -0.3
553,311 - -1.0
553,326 + +1.5
553,346 - -0.2
553,349 - -0.4
553,349 - -0.1
553,379 + -0.6
553,466 + -0.2
553,466 + -0.8
553,466 + +0.4
553,467 - +0.7
553,467 - +0.3
553,562 + -0.3
553,563 - -1.7
553,600 + -0.0
553,601 - -0.6
553,667 - Echvi_0497 0.14 +0.8
553,669 + Echvi_0497 0.15 +0.1
553,669 + Echvi_0497 0.15 -2.0
553,670 - Echvi_0497 0.15 -0.1
553,683 + Echvi_0497 0.16 +0.1
553,683 + Echvi_0497 0.16 -0.3
553,684 - Echvi_0497 0.16 +0.2
553,698 + Echvi_0497 0.17 -0.2
553,708 - Echvi_0497 0.18 +0.2
553,708 - Echvi_0497 0.18 +0.2
553,736 + Echvi_0497 0.21 +0.7
553,783 - Echvi_0497 0.25 +2.1
553,783 - Echvi_0497 0.25 +0.1
553,787 - Echvi_0497 0.26 +1.2
553,795 - Echvi_0497 0.27 +1.4
553,799 - Echvi_0497 0.27 -0.6
553,876 + Echvi_0497 0.34 -0.4
553,886 - Echvi_0497 0.35 +0.0
553,908 + Echvi_0497 0.37 -0.0
553,950 + Echvi_0497 0.41 -0.4
553,950 + Echvi_0497 0.41 +0.4
553,951 - Echvi_0497 0.42 +1.1
553,951 - Echvi_0497 0.42 -1.1
553,951 - Echvi_0497 0.42 -0.5
553,951 - Echvi_0497 0.42 +0.6
554,057 - Echvi_0497 0.52 +0.3
554,071 - Echvi_0497 0.53 -1.3
554,146 + Echvi_0497 0.60 -0.8
554,146 + Echvi_0497 0.60 -0.2
554,146 + Echvi_0497 0.60 +1.7
554,146 + Echvi_0497 0.60 -0.1
554,147 - Echvi_0497 0.60 -0.1
554,160 - Echvi_0497 0.62 -0.3

Or see this region's nucleotide sequence