Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0394

Experiment: m.b. Nickel (II) chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0392 and Echvi_0393 are separated by 32 nucleotidesEchvi_0393 and Echvi_0394 overlap by 61 nucleotidesEchvi_0394 and Echvi_0395 are separated by 207 nucleotides Echvi_0392: Echvi_0392 - DNA primase (bacterial type), at 417,548 to 418,410 _0392 Echvi_0393: Echvi_0393 - hypothetical protein, at 418,443 to 418,616 _0393 Echvi_0394: Echvi_0394 - hypothetical protein, at 418,556 to 418,837 _0394 Echvi_0395: Echvi_0395 - DNA repair proteins, at 419,045 to 419,515 _0395 Position (kb) 418 419Strain fitness (log2 ratio) -2 -1 0 1 2at 417.593 kb on + strandat 417.612 kb on + strandat 417.612 kb on + strandat 417.613 kb on - strandat 417.613 kb on - strandat 417.680 kb on + strand, within Echvi_0392at 417.680 kb on + strand, within Echvi_0392at 417.680 kb on + strand, within Echvi_0392at 417.680 kb on + strand, within Echvi_0392at 417.680 kb on + strand, within Echvi_0392at 417.680 kb on + strand, within Echvi_0392at 417.681 kb on - strand, within Echvi_0392at 417.681 kb on - strand, within Echvi_0392at 417.681 kb on - strand, within Echvi_0392at 417.681 kb on - strand, within Echvi_0392at 417.697 kb on - strand, within Echvi_0392at 417.745 kb on + strand, within Echvi_0392at 417.745 kb on + strand, within Echvi_0392at 417.746 kb on - strand, within Echvi_0392at 417.746 kb on - strand, within Echvi_0392at 417.767 kb on + strand, within Echvi_0392at 417.767 kb on + strand, within Echvi_0392at 417.767 kb on + strand, within Echvi_0392at 417.768 kb on - strand, within Echvi_0392at 417.768 kb on - strand, within Echvi_0392at 417.841 kb on + strand, within Echvi_0392at 417.841 kb on + strand, within Echvi_0392at 417.841 kb on + strand, within Echvi_0392at 417.841 kb on + strand, within Echvi_0392at 417.842 kb on - strand, within Echvi_0392at 417.842 kb on - strand, within Echvi_0392at 417.867 kb on + strand, within Echvi_0392at 417.870 kb on + strand, within Echvi_0392at 417.870 kb on + strand, within Echvi_0392at 417.871 kb on - strand, within Echvi_0392at 417.871 kb on - strand, within Echvi_0392at 417.874 kb on + strand, within Echvi_0392at 417.874 kb on + strand, within Echvi_0392at 417.874 kb on + strand, within Echvi_0392at 417.875 kb on - strand, within Echvi_0392at 417.875 kb on - strand, within Echvi_0392at 417.903 kb on + strand, within Echvi_0392at 417.904 kb on - strand, within Echvi_0392at 417.938 kb on - strand, within Echvi_0392at 417.975 kb on + strand, within Echvi_0392at 417.978 kb on + strandat 417.978 kb on + strand, within Echvi_0392at 417.979 kb on - strand, within Echvi_0392at 417.979 kb on - strand, within Echvi_0392at 418.016 kb on + strand, within Echvi_0392at 418.017 kb on - strand, within Echvi_0392at 418.017 kb on - strand, within Echvi_0392at 418.141 kb on - strand, within Echvi_0392at 418.146 kb on + strand, within Echvi_0392at 418.146 kb on + strand, within Echvi_0392at 418.146 kb on + strand, within Echvi_0392at 418.149 kb on + strand, within Echvi_0392at 418.150 kb on - strand, within Echvi_0392at 418.160 kb on + strand, within Echvi_0392at 418.160 kb on + strand, within Echvi_0392at 418.161 kb on - strand, within Echvi_0392at 418.233 kb on + strand, within Echvi_0392at 418.233 kb on + strand, within Echvi_0392at 418.234 kb on - strand, within Echvi_0392at 418.256 kb on - strand, within Echvi_0392at 418.278 kb on + strand, within Echvi_0392at 418.323 kb on - strand, within Echvi_0392at 418.413 kb on + strandat 418.517 kb on - strand, within Echvi_0393at 418.517 kb on - strand, within Echvi_0393at 418.517 kb on - strand, within Echvi_0393at 418.519 kb on + strand, within Echvi_0393at 418.519 kb on + strand, within Echvi_0393at 418.520 kb on - strand, within Echvi_0393at 418.520 kb on - strand, within Echvi_0393at 418.525 kb on + strand, within Echvi_0393at 418.545 kb on - strand, within Echvi_0393at 418.931 kb on + strandat 418.935 kb on + strandat 418.935 kb on + strandat 418.936 kb on - strandat 418.943 kb on + strandat 418.944 kb on - strandat 419.067 kb on + strandat 419.067 kb on + strandat 419.067 kb on + strandat 419.096 kb on + strand, within Echvi_0395at 419.096 kb on + strand, within Echvi_0395at 419.183 kb on - strand, within Echvi_0395at 419.224 kb on + strand, within Echvi_0395at 419.665 kb on + strandat 419.693 kb on + strandat 419.701 kb on + strandat 419.720 kb on + strandat 419.721 kb on - strandat 419.722 kb on + strandat 419.723 kb on - strandat 419.723 kb on - strandat 419.723 kb on - strandat 419.723 kb on - strandat 419.723 kb on - strandat 419.726 kb on + strandat 419.726 kb on + strandat 419.726 kb on + strandat 419.731 kb on - strandat 419.731 kb on - strandat 419.736 kb on + strandat 419.749 kb on + strandat 419.759 kb on + strandat 419.806 kb on - strandat 419.827 kb on - strandat 419.829 kb on - strandat 419.829 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 0.5 mM
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417,593 + +1.2
417,612 + +0.1
417,612 + -0.8
417,613 - -0.1
417,613 - -0.7
417,680 + Echvi_0392 0.15 -0.1
417,680 + Echvi_0392 0.15 -0.8
417,680 + Echvi_0392 0.15 -0.9
417,680 + Echvi_0392 0.15 +0.5
417,680 + Echvi_0392 0.15 +0.9
417,680 + Echvi_0392 0.15 +0.1
417,681 - Echvi_0392 0.15 +0.3
417,681 - Echvi_0392 0.15 -0.5
417,681 - Echvi_0392 0.15 +1.5
417,681 - Echvi_0392 0.15 +0.4
417,697 - Echvi_0392 0.17 -0.1
417,745 + Echvi_0392 0.23 +0.8
417,745 + Echvi_0392 0.23 -0.2
417,746 - Echvi_0392 0.23 +0.8
417,746 - Echvi_0392 0.23 -0.1
417,767 + Echvi_0392 0.25 -2.2
417,767 + Echvi_0392 0.25 -0.5
417,767 + Echvi_0392 0.25 -0.2
417,768 - Echvi_0392 0.25 -0.6
417,768 - Echvi_0392 0.25 +0.8
417,841 + Echvi_0392 0.34 +1.5
417,841 + Echvi_0392 0.34 +1.7
417,841 + Echvi_0392 0.34 -0.5
417,841 + Echvi_0392 0.34 -0.6
417,842 - Echvi_0392 0.34 +0.7
417,842 - Echvi_0392 0.34 +0.3
417,867 + Echvi_0392 0.37 +1.7
417,870 + Echvi_0392 0.37 -0.9
417,870 + Echvi_0392 0.37 -1.1
417,871 - Echvi_0392 0.37 -1.6
417,871 - Echvi_0392 0.37 -0.7
417,874 + Echvi_0392 0.38 -0.1
417,874 + Echvi_0392 0.38 +0.1
417,874 + Echvi_0392 0.38 -0.5
417,875 - Echvi_0392 0.38 +0.7
417,875 - Echvi_0392 0.38 +0.7
417,903 + Echvi_0392 0.41 +0.2
417,904 - Echvi_0392 0.41 -0.4
417,938 - Echvi_0392 0.45 -0.6
417,975 + Echvi_0392 0.49 +0.7
417,978 + +2.7
417,978 + Echvi_0392 0.50 +0.4
417,979 - Echvi_0392 0.50 -0.2
417,979 - Echvi_0392 0.50 -1.1
418,016 + Echvi_0392 0.54 -0.0
418,017 - Echvi_0392 0.54 +1.0
418,017 - Echvi_0392 0.54 +0.1
418,141 - Echvi_0392 0.69 +0.5
418,146 + Echvi_0392 0.69 -0.0
418,146 + Echvi_0392 0.69 +0.3
418,146 + Echvi_0392 0.69 +0.3
418,149 + Echvi_0392 0.70 +0.5
418,150 - Echvi_0392 0.70 -1.3
418,160 + Echvi_0392 0.71 -0.3
418,160 + Echvi_0392 0.71 +0.2
418,161 - Echvi_0392 0.71 +0.1
418,233 + Echvi_0392 0.79 -1.5
418,233 + Echvi_0392 0.79 -0.0
418,234 - Echvi_0392 0.79 -0.8
418,256 - Echvi_0392 0.82 +0.8
418,278 + Echvi_0392 0.85 -1.0
418,323 - Echvi_0392 0.90 +0.5
418,413 + +0.2
418,517 - Echvi_0393 0.43 +0.8
418,517 - Echvi_0393 0.43 -0.2
418,517 - Echvi_0393 0.43 +0.4
418,519 + Echvi_0393 0.44 -0.0
418,519 + Echvi_0393 0.44 +0.3
418,520 - Echvi_0393 0.44 -0.0
418,520 - Echvi_0393 0.44 -0.2
418,525 + Echvi_0393 0.47 +0.1
418,545 - Echvi_0393 0.59 -0.9
418,931 + -0.1
418,935 + -0.6
418,935 + -0.2
418,936 - -0.1
418,943 + -0.8
418,944 - -1.0
419,067 + +0.0
419,067 + +0.2
419,067 + +0.6
419,096 + Echvi_0395 0.11 -0.0
419,096 + Echvi_0395 0.11 -0.0
419,183 - Echvi_0395 0.29 +0.8
419,224 + Echvi_0395 0.38 +0.6
419,665 + +1.0
419,693 + +0.8
419,701 + -0.0
419,720 + +0.1
419,721 - -0.8
419,722 + +0.6
419,723 - -0.9
419,723 - -1.4
419,723 - +0.2
419,723 - -0.1
419,723 - -1.2
419,726 + +0.2
419,726 + +0.1
419,726 + -1.4
419,731 - -0.1
419,731 - -1.2
419,736 + +1.0
419,749 + +0.1
419,759 + +0.6
419,806 - -0.1
419,827 - -0.0
419,829 - -0.0
419,829 - -0.1

Or see this region's nucleotide sequence