Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0022

Experiment: m.b. Nickel (II) chloride 0.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_0020 and Echvi_0021 are separated by 71 nucleotidesEchvi_0021 and Echvi_0022 are separated by 2 nucleotidesEchvi_0022 and Echvi_0023 are separated by 4 nucleotides Echvi_0020: Echvi_0020 - conserved hypothetical protein YmdA/YtgF, at 18,793 to 20,352 _0020 Echvi_0021: Echvi_0021 - Cell division protein ZapA., at 20,424 to 20,708 _0021 Echvi_0022: Echvi_0022 - hypothetical protein, at 20,711 to 20,995 _0022 Echvi_0023: Echvi_0023 - phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial, at 21,000 to 23,411 _0023 Position (kb) 20 21Strain fitness (log2 ratio) -1 0 1at 20.353 kb on - strandat 20.362 kb on - strandat 20.370 kb on - strandat 20.998 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 0.5 mM
remove
20,353 - +0.2
20,362 - +0.9
20,370 - -0.3
20,998 + +0.2

Or see this region's nucleotide sequence