Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4511

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4510 and EX28DRAFT_4511 are separated by 63 nucleotidesEX28DRAFT_4511 and EX28DRAFT_4512 overlap by 1 nucleotidesEX28DRAFT_4512 and EX28DRAFT_4513 are separated by 41 nucleotides EX28DRAFT_4510: EX28DRAFT_4510 - fatty oxidation complex, alpha subunit FadB, at 75,346 to 77,662 _4510 EX28DRAFT_4511: EX28DRAFT_4511 - Xaa-Pro aminopeptidase, at 77,726 to 79,057 _4511 EX28DRAFT_4512: EX28DRAFT_4512 - Uncharacterized conserved protein, at 79,057 to 79,671 _4512 EX28DRAFT_4513: EX28DRAFT_4513 - Trk-type K+ transport systems, membrane components, at 79,713 to 81,164 _4513 Position (kb) 77 78 79 80Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 77.025 kb on + strand, within EX28DRAFT_4510at 77.076 kb on + strand, within EX28DRAFT_4510at 77.251 kb on - strand, within EX28DRAFT_4510at 77.381 kb on - strand, within EX28DRAFT_4510at 77.510 kb on + strandat 77.511 kb on - strandat 77.529 kb on - strandat 77.529 kb on - strandat 77.683 kb on + strandat 77.790 kb on + strandat 77.804 kb on - strandat 78.000 kb on + strand, within EX28DRAFT_4511at 78.001 kb on - strand, within EX28DRAFT_4511at 78.107 kb on + strand, within EX28DRAFT_4511at 78.108 kb on - strand, within EX28DRAFT_4511at 78.109 kb on + strand, within EX28DRAFT_4511at 78.194 kb on + strand, within EX28DRAFT_4511at 78.327 kb on - strand, within EX28DRAFT_4511at 78.477 kb on - strand, within EX28DRAFT_4511at 78.605 kb on + strand, within EX28DRAFT_4511at 78.605 kb on + strand, within EX28DRAFT_4511at 78.605 kb on + strand, within EX28DRAFT_4511at 78.605 kb on + strand, within EX28DRAFT_4511at 78.605 kb on + strand, within EX28DRAFT_4511at 78.605 kb on + strand, within EX28DRAFT_4511at 78.655 kb on + strand, within EX28DRAFT_4511at 78.818 kb on - strand, within EX28DRAFT_4511at 78.827 kb on + strand, within EX28DRAFT_4511at 78.828 kb on - strand, within EX28DRAFT_4511at 78.828 kb on - strand, within EX28DRAFT_4511at 78.887 kb on + strand, within EX28DRAFT_4511at 78.887 kb on + strand, within EX28DRAFT_4511at 78.888 kb on - strand, within EX28DRAFT_4511at 78.998 kb on - strandat 78.998 kb on - strandat 79.125 kb on + strand, within EX28DRAFT_4512at 79.125 kb on + strand, within EX28DRAFT_4512at 79.152 kb on - strand, within EX28DRAFT_4512at 79.342 kb on - strand, within EX28DRAFT_4512at 79.364 kb on - strand, within EX28DRAFT_4512at 79.446 kb on + strand, within EX28DRAFT_4512at 79.446 kb on + strand, within EX28DRAFT_4512at 79.471 kb on + strand, within EX28DRAFT_4512at 79.471 kb on + strand, within EX28DRAFT_4512at 79.473 kb on + strand, within EX28DRAFT_4512at 79.474 kb on - strand, within EX28DRAFT_4512at 79.575 kb on - strand, within EX28DRAFT_4512at 79.575 kb on - strand, within EX28DRAFT_4512at 79.575 kb on - strand, within EX28DRAFT_4512at 79.800 kb on - strandat 79.976 kb on + strand, within EX28DRAFT_4513at 79.976 kb on + strand, within EX28DRAFT_4513at 79.995 kb on - strand, within EX28DRAFT_4513

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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77,025 + EX28DRAFT_4510 0.72 +4.4
77,076 + EX28DRAFT_4510 0.75 +0.0
77,251 - EX28DRAFT_4510 0.82 +0.6
77,381 - EX28DRAFT_4510 0.88 -1.0
77,510 + +0.5
77,511 - +0.8
77,529 - +0.2
77,529 - -0.0
77,683 + +0.2
77,790 + +0.2
77,804 - +0.1
78,000 + EX28DRAFT_4511 0.21 +0.7
78,001 - EX28DRAFT_4511 0.21 -0.1
78,107 + EX28DRAFT_4511 0.29 +0.8
78,108 - EX28DRAFT_4511 0.29 -0.4
78,109 + EX28DRAFT_4511 0.29 +0.3
78,194 + EX28DRAFT_4511 0.35 -1.1
78,327 - EX28DRAFT_4511 0.45 +0.2
78,477 - EX28DRAFT_4511 0.56 +0.4
78,605 + EX28DRAFT_4511 0.66 +0.9
78,605 + EX28DRAFT_4511 0.66 -0.0
78,605 + EX28DRAFT_4511 0.66 +0.1
78,605 + EX28DRAFT_4511 0.66 +0.6
78,605 + EX28DRAFT_4511 0.66 +0.7
78,605 + EX28DRAFT_4511 0.66 -0.4
78,655 + EX28DRAFT_4511 0.70 +0.1
78,818 - EX28DRAFT_4511 0.82 +0.4
78,827 + EX28DRAFT_4511 0.83 +1.3
78,828 - EX28DRAFT_4511 0.83 +0.5
78,828 - EX28DRAFT_4511 0.83 -0.1
78,887 + EX28DRAFT_4511 0.87 -0.1
78,887 + EX28DRAFT_4511 0.87 +0.1
78,888 - EX28DRAFT_4511 0.87 +0.2
78,998 - +0.6
78,998 - -0.2
79,125 + EX28DRAFT_4512 0.11 -0.3
79,125 + EX28DRAFT_4512 0.11 +1.1
79,152 - EX28DRAFT_4512 0.15 +1.1
79,342 - EX28DRAFT_4512 0.46 -0.8
79,364 - EX28DRAFT_4512 0.50 -0.6
79,446 + EX28DRAFT_4512 0.63 -0.0
79,446 + EX28DRAFT_4512 0.63 -4.3
79,471 + EX28DRAFT_4512 0.67 +0.3
79,471 + EX28DRAFT_4512 0.67 -0.7
79,473 + EX28DRAFT_4512 0.68 -0.0
79,474 - EX28DRAFT_4512 0.68 +0.1
79,575 - EX28DRAFT_4512 0.84 +0.0
79,575 - EX28DRAFT_4512 0.84 +0.4
79,575 - EX28DRAFT_4512 0.84 -1.1
79,800 - -0.9
79,976 + EX28DRAFT_4513 0.18 -0.6
79,976 + EX28DRAFT_4513 0.18 -0.6
79,995 - EX28DRAFT_4513 0.19 -0.9

Or see this region's nucleotide sequence