Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4369 and EX28DRAFT_4370 are separated by 44 nucleotides EX28DRAFT_4370 and EX28DRAFT_4371 are separated by 8 nucleotides EX28DRAFT_4371 and EX28DRAFT_4372 are separated by 199 nucleotides EX28DRAFT_4372 and EX28DRAFT_4373 are separated by 2 nucleotides EX28DRAFT_4373 and EX28DRAFT_4374 are separated by 39 nucleotides
EX28DRAFT_4369: EX28DRAFT_4369 - D-tyrosyl-tRNA(Tyr) deacylase, at 35,480 to 35,917
_4369
EX28DRAFT_4370: EX28DRAFT_4370 - thioesterase domain, putative, at 35,962 to 36,903
_4370
EX28DRAFT_4371: EX28DRAFT_4371 - Esterase/lipase, at 36,912 to 37,832
_4371
EX28DRAFT_4372: EX28DRAFT_4372 - Ribbon-helix-helix protein, copG family, at 38,032 to 38,274
_4372
EX28DRAFT_4373: EX28DRAFT_4373 - Predicted nucleic acid-binding protein, contains PIN domain, at 38,277 to 38,648
_4373
EX28DRAFT_4374: EX28DRAFT_4374 - formate dehydrogenase accessory protein FdhE, at 38,688 to 39,617
_4374
Position (kb) 36
37
38 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 35.956 kb on - strand at 35.956 kb on - strand at 35.956 kb on - strand at 35.961 kb on + strand at 35.961 kb on + strand at 35.962 kb on - strand at 35.962 kb on - strand at 35.962 kb on - strand at 35.965 kb on + strand at 35.965 kb on + strand at 35.965 kb on + strand at 35.966 kb on - strand at 35.966 kb on - strand at 36.010 kb on + strand at 36.010 kb on + strand at 36.011 kb on - strand at 36.145 kb on + strand, within EX28DRAFT_4370 at 36.145 kb on + strand, within EX28DRAFT_4370 at 36.146 kb on - strand, within EX28DRAFT_4370 at 36.146 kb on - strand, within EX28DRAFT_4370 at 36.146 kb on - strand, within EX28DRAFT_4370 at 36.225 kb on - strand, within EX28DRAFT_4370 at 36.411 kb on + strand, within EX28DRAFT_4370 at 36.411 kb on + strand, within EX28DRAFT_4370 at 36.412 kb on - strand, within EX28DRAFT_4370 at 36.505 kb on + strand, within EX28DRAFT_4370 at 36.506 kb on - strand, within EX28DRAFT_4370 at 36.506 kb on - strand, within EX28DRAFT_4370 at 36.522 kb on + strand, within EX28DRAFT_4370 at 36.687 kb on + strand, within EX28DRAFT_4370 at 36.783 kb on - strand, within EX28DRAFT_4370 at 36.842 kb on - strand at 36.842 kb on - strand at 36.842 kb on - strand at 36.842 kb on - strand at 36.842 kb on - strand at 36.842 kb on - strand at 36.842 kb on - strand at 36.901 kb on + strand at 36.932 kb on + strand at 36.933 kb on - strand at 36.933 kb on - strand at 37.063 kb on + strand, within EX28DRAFT_4371 at 37.064 kb on - strand, within EX28DRAFT_4371 at 37.064 kb on - strand, within EX28DRAFT_4371 at 37.097 kb on - strand, within EX28DRAFT_4371 at 37.230 kb on - strand, within EX28DRAFT_4371 at 37.232 kb on + strand, within EX28DRAFT_4371 at 37.232 kb on + strand, within EX28DRAFT_4371 at 37.232 kb on + strand, within EX28DRAFT_4371 at 37.232 kb on + strand, within EX28DRAFT_4371 at 37.232 kb on + strand, within EX28DRAFT_4371 at 37.232 kb on + strand, within EX28DRAFT_4371 at 37.232 kb on + strand, within EX28DRAFT_4371 at 37.232 kb on + strand, within EX28DRAFT_4371 at 37.232 kb on + strand, within EX28DRAFT_4371 at 37.233 kb on - strand, within EX28DRAFT_4371 at 37.233 kb on - strand, within EX28DRAFT_4371 at 37.233 kb on - strand, within EX28DRAFT_4371 at 37.233 kb on - strand, within EX28DRAFT_4371 at 37.235 kb on - strand, within EX28DRAFT_4371 at 37.248 kb on - strand, within EX28DRAFT_4371 at 37.255 kb on + strand, within EX28DRAFT_4371 at 37.255 kb on + strand, within EX28DRAFT_4371 at 37.291 kb on + strand, within EX28DRAFT_4371 at 37.294 kb on - strand, within EX28DRAFT_4371 at 37.295 kb on + strand, within EX28DRAFT_4371 at 37.296 kb on - strand, within EX28DRAFT_4371 at 37.296 kb on - strand, within EX28DRAFT_4371 at 37.296 kb on - strand, within EX28DRAFT_4371 at 37.296 kb on - strand, within EX28DRAFT_4371 at 37.296 kb on - strand, within EX28DRAFT_4371 at 37.301 kb on + strand, within EX28DRAFT_4371 at 37.301 kb on + strand, within EX28DRAFT_4371 at 37.302 kb on - strand, within EX28DRAFT_4371 at 37.308 kb on + strand, within EX28DRAFT_4371 at 37.309 kb on - strand, within EX28DRAFT_4371 at 37.403 kb on + strand, within EX28DRAFT_4371 at 37.404 kb on - strand, within EX28DRAFT_4371 at 37.404 kb on - strand, within EX28DRAFT_4371 at 37.404 kb on - strand, within EX28DRAFT_4371 at 37.481 kb on + strand, within EX28DRAFT_4371 at 37.482 kb on - strand, within EX28DRAFT_4371 at 37.482 kb on - strand, within EX28DRAFT_4371 at 37.482 kb on - strand, within EX28DRAFT_4371 at 37.482 kb on - strand, within EX28DRAFT_4371 at 37.532 kb on - strand, within EX28DRAFT_4371 at 37.583 kb on + strand, within EX28DRAFT_4371 at 37.600 kb on + strand, within EX28DRAFT_4371 at 37.603 kb on + strand, within EX28DRAFT_4371 at 37.603 kb on + strand, within EX28DRAFT_4371 at 37.604 kb on - strand, within EX28DRAFT_4371 at 37.604 kb on - strand, within EX28DRAFT_4371 at 37.634 kb on + strand, within EX28DRAFT_4371 at 37.635 kb on - strand, within EX28DRAFT_4371 at 37.635 kb on - strand, within EX28DRAFT_4371 at 37.732 kb on + strand, within EX28DRAFT_4371 at 37.732 kb on + strand, within EX28DRAFT_4371 at 37.732 kb on + strand, within EX28DRAFT_4371 at 37.733 kb on - strand, within EX28DRAFT_4371 at 37.859 kb on + strand at 37.860 kb on - strand at 37.879 kb on + strand at 37.880 kb on - strand at 37.953 kb on + strand at 37.953 kb on + strand at 37.987 kb on + strand at 37.987 kb on + strand at 37.988 kb on - strand at 38.019 kb on - strand at 38.019 kb on - strand at 38.022 kb on - strand at 38.031 kb on + strand at 38.031 kb on + strand at 38.032 kb on - strand at 38.032 kb on - strand at 38.090 kb on + strand, within EX28DRAFT_4372 at 38.091 kb on - strand, within EX28DRAFT_4372 at 38.167 kb on + strand, within EX28DRAFT_4372 at 38.168 kb on - strand, within EX28DRAFT_4372 at 38.246 kb on - strand, within EX28DRAFT_4372 at 38.272 kb on + strand at 38.273 kb on - strand at 38.307 kb on - strand at 38.307 kb on - strand at 38.307 kb on - strand at 38.307 kb on - strand at 38.325 kb on - strand, within EX28DRAFT_4373 at 38.597 kb on + strand, within EX28DRAFT_4373 at 38.646 kb on + strand at 38.685 kb on + strand at 38.685 kb on + strand at 38.685 kb on + strand at 38.689 kb on + strand at 38.689 kb on + strand at 38.689 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 35,956 - -0.3 35,956 - -0.5 35,956 - -0.0 35,961 + -0.7 35,961 + +0.2 35,962 - -0.7 35,962 - -0.7 35,962 - +0.8 35,965 + -0.4 35,965 + +0.1 35,965 + -0.2 35,966 - -0.0 35,966 - +0.3 36,010 + -0.4 36,010 + +0.5 36,011 - -0.9 36,145 + EX28DRAFT_4370 0.19 +0.4 36,145 + EX28DRAFT_4370 0.19 +0.2 36,146 - EX28DRAFT_4370 0.20 +0.5 36,146 - EX28DRAFT_4370 0.20 -0.7 36,146 - EX28DRAFT_4370 0.20 -0.0 36,225 - EX28DRAFT_4370 0.28 -0.2 36,411 + EX28DRAFT_4370 0.48 +0.4 36,411 + EX28DRAFT_4370 0.48 +0.2 36,412 - EX28DRAFT_4370 0.48 -1.7 36,505 + EX28DRAFT_4370 0.58 +0.1 36,506 - EX28DRAFT_4370 0.58 -0.4 36,506 - EX28DRAFT_4370 0.58 -0.0 36,522 + EX28DRAFT_4370 0.59 +0.3 36,687 + EX28DRAFT_4370 0.77 -0.2 36,783 - EX28DRAFT_4370 0.87 +0.2 36,842 - +1.1 36,842 - +0.6 36,842 - +0.9 36,842 - +0.2 36,842 - -0.1 36,842 - +0.6 36,842 - +0.6 36,901 + +0.0 36,932 + -0.4 36,933 - +1.1 36,933 - -1.2 37,063 + EX28DRAFT_4371 0.16 +0.1 37,064 - EX28DRAFT_4371 0.17 -0.0 37,064 - EX28DRAFT_4371 0.17 +0.5 37,097 - EX28DRAFT_4371 0.20 +0.3 37,230 - EX28DRAFT_4371 0.35 -0.8 37,232 + EX28DRAFT_4371 0.35 +0.4 37,232 + EX28DRAFT_4371 0.35 -0.1 37,232 + EX28DRAFT_4371 0.35 +0.1 37,232 + EX28DRAFT_4371 0.35 -0.9 37,232 + EX28DRAFT_4371 0.35 +0.3 37,232 + EX28DRAFT_4371 0.35 +0.1 37,232 + EX28DRAFT_4371 0.35 -0.0 37,232 + EX28DRAFT_4371 0.35 -0.1 37,232 + EX28DRAFT_4371 0.35 +0.7 37,233 - EX28DRAFT_4371 0.35 +0.9 37,233 - EX28DRAFT_4371 0.35 -0.2 37,233 - EX28DRAFT_4371 0.35 -0.3 37,233 - EX28DRAFT_4371 0.35 +0.4 37,235 - EX28DRAFT_4371 0.35 +3.1 37,248 - EX28DRAFT_4371 0.36 +0.7 37,255 + EX28DRAFT_4371 0.37 -0.7 37,255 + EX28DRAFT_4371 0.37 -0.2 37,291 + EX28DRAFT_4371 0.41 +0.0 37,294 - EX28DRAFT_4371 0.41 +2.1 37,295 + EX28DRAFT_4371 0.42 -0.1 37,296 - EX28DRAFT_4371 0.42 -0.1 37,296 - EX28DRAFT_4371 0.42 +0.1 37,296 - EX28DRAFT_4371 0.42 +0.6 37,296 - EX28DRAFT_4371 0.42 +0.1 37,296 - EX28DRAFT_4371 0.42 -0.8 37,301 + EX28DRAFT_4371 0.42 -0.1 37,301 + EX28DRAFT_4371 0.42 +0.3 37,302 - EX28DRAFT_4371 0.42 -0.2 37,308 + EX28DRAFT_4371 0.43 -1.6 37,309 - EX28DRAFT_4371 0.43 +0.8 37,403 + EX28DRAFT_4371 0.53 -0.3 37,404 - EX28DRAFT_4371 0.53 +0.2 37,404 - EX28DRAFT_4371 0.53 +0.3 37,404 - EX28DRAFT_4371 0.53 +0.0 37,481 + EX28DRAFT_4371 0.62 +0.4 37,482 - EX28DRAFT_4371 0.62 +1.4 37,482 - EX28DRAFT_4371 0.62 +2.0 37,482 - EX28DRAFT_4371 0.62 +0.8 37,482 - EX28DRAFT_4371 0.62 -0.1 37,532 - EX28DRAFT_4371 0.67 +0.4 37,583 + EX28DRAFT_4371 0.73 -0.0 37,600 + EX28DRAFT_4371 0.75 -1.7 37,603 + EX28DRAFT_4371 0.75 -0.2 37,603 + EX28DRAFT_4371 0.75 -0.6 37,604 - EX28DRAFT_4371 0.75 -0.2 37,604 - EX28DRAFT_4371 0.75 -0.2 37,634 + EX28DRAFT_4371 0.78 -0.9 37,635 - EX28DRAFT_4371 0.79 +0.5 37,635 - EX28DRAFT_4371 0.79 +0.1 37,732 + EX28DRAFT_4371 0.89 -0.5 37,732 + EX28DRAFT_4371 0.89 -1.7 37,732 + EX28DRAFT_4371 0.89 -1.4 37,733 - EX28DRAFT_4371 0.89 +0.1 37,859 + +0.1 37,860 - +0.5 37,879 + -2.3 37,880 - +0.2 37,953 + +0.7 37,953 + +0.3 37,987 + +0.6 37,987 + +0.3 37,988 - -0.4 38,019 - -4.8 38,019 - +0.0 38,022 - -1.1 38,031 + +0.1 38,031 + -0.3 38,032 - -2.9 38,032 - +0.7 38,090 + EX28DRAFT_4372 0.24 +0.5 38,091 - EX28DRAFT_4372 0.24 -0.8 38,167 + EX28DRAFT_4372 0.56 -0.1 38,168 - EX28DRAFT_4372 0.56 +0.5 38,246 - EX28DRAFT_4372 0.88 +2.0 38,272 + -0.2 38,273 - +0.3 38,307 - -1.0 38,307 - +1.9 38,307 - -0.3 38,307 - -0.6 38,325 - EX28DRAFT_4373 0.13 -0.6 38,597 + EX28DRAFT_4373 0.86 -0.1 38,646 + +0.1 38,685 + -0.2 38,685 + +2.1 38,685 + +4.3 38,689 + +0.3 38,689 + +0.8 38,689 + +0.0
Or see this region's nucleotide sequence