Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4215

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4213 and EX28DRAFT_4214 are separated by 58 nucleotidesEX28DRAFT_4214 and EX28DRAFT_4215 are separated by 69 nucleotidesEX28DRAFT_4215 and EX28DRAFT_4216 are separated by 193 nucleotides EX28DRAFT_4213: EX28DRAFT_4213 - phosphonate metabolism protein PhnP, at 19,118 to 19,876 _4213 EX28DRAFT_4214: EX28DRAFT_4214 - hypothetical protein, at 19,935 to 20,258 _4214 EX28DRAFT_4215: EX28DRAFT_4215 - Response regulator receiver domain/HAMP domain/Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, at 20,328 to 22,610 _4215 EX28DRAFT_4216: EX28DRAFT_4216 - ABC-type sugar transport system, ATPase component, at 22,804 to 24,324 _4216 Position (kb) 20 21 22 23Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 19.668 kb on + strand, within EX28DRAFT_4213at 19.725 kb on + strand, within EX28DRAFT_4213at 19.726 kb on - strand, within EX28DRAFT_4213at 19.726 kb on - strand, within EX28DRAFT_4213at 19.726 kb on - strand, within EX28DRAFT_4213at 19.726 kb on - strand, within EX28DRAFT_4213at 19.726 kb on - strand, within EX28DRAFT_4213at 19.729 kb on + strand, within EX28DRAFT_4213at 19.836 kb on + strandat 19.836 kb on + strandat 19.836 kb on + strandat 19.837 kb on - strandat 19.837 kb on - strandat 20.140 kb on + strand, within EX28DRAFT_4214at 20.140 kb on + strand, within EX28DRAFT_4214at 20.141 kb on - strand, within EX28DRAFT_4214at 20.141 kb on - strand, within EX28DRAFT_4214at 20.141 kb on - strand, within EX28DRAFT_4214at 20.189 kb on + strand, within EX28DRAFT_4214at 20.282 kb on - strandat 20.292 kb on + strandat 20.391 kb on + strandat 20.392 kb on - strandat 20.538 kb on - strandat 20.571 kb on - strand, within EX28DRAFT_4215at 20.571 kb on - strand, within EX28DRAFT_4215at 20.571 kb on - strand, within EX28DRAFT_4215at 21.014 kb on + strand, within EX28DRAFT_4215at 21.653 kb on + strand, within EX28DRAFT_4215at 21.670 kb on + strand, within EX28DRAFT_4215at 21.670 kb on + strand, within EX28DRAFT_4215at 21.674 kb on + strand, within EX28DRAFT_4215at 21.674 kb on + strand, within EX28DRAFT_4215at 21.675 kb on - strand, within EX28DRAFT_4215at 21.675 kb on - strand, within EX28DRAFT_4215at 21.675 kb on - strand, within EX28DRAFT_4215at 21.728 kb on + strand, within EX28DRAFT_4215at 21.728 kb on + strand, within EX28DRAFT_4215at 21.806 kb on - strand, within EX28DRAFT_4215at 21.806 kb on - strand, within EX28DRAFT_4215at 21.806 kb on - strand, within EX28DRAFT_4215at 21.812 kb on + strand, within EX28DRAFT_4215at 21.857 kb on + strand, within EX28DRAFT_4215at 21.857 kb on + strand, within EX28DRAFT_4215at 21.857 kb on + strand, within EX28DRAFT_4215at 21.857 kb on + strand, within EX28DRAFT_4215at 21.857 kb on + strand, within EX28DRAFT_4215at 21.858 kb on - strand, within EX28DRAFT_4215at 21.858 kb on - strand, within EX28DRAFT_4215at 21.858 kb on - strand, within EX28DRAFT_4215at 21.858 kb on - strand, within EX28DRAFT_4215at 21.858 kb on - strand, within EX28DRAFT_4215at 21.858 kb on - strand, within EX28DRAFT_4215at 21.858 kb on - strand, within EX28DRAFT_4215at 21.859 kb on + strand, within EX28DRAFT_4215at 21.859 kb on + strand, within EX28DRAFT_4215at 21.860 kb on - strand, within EX28DRAFT_4215at 21.964 kb on - strand, within EX28DRAFT_4215at 22.132 kb on + strand, within EX28DRAFT_4215at 22.133 kb on - strand, within EX28DRAFT_4215at 22.357 kb on + strand, within EX28DRAFT_4215at 22.554 kb on - strandat 22.617 kb on - strandat 22.682 kb on - strandat 22.690 kb on - strandat 22.700 kb on + strandat 22.700 kb on + strandat 22.705 kb on + strandat 22.705 kb on + strandat 22.706 kb on - strandat 22.706 kb on - strandat 22.710 kb on - strandat 22.716 kb on - strandat 22.720 kb on - strandat 22.720 kb on - strandat 22.720 kb on - strandat 22.823 kb on + strandat 22.824 kb on - strandat 22.969 kb on + strand, within EX28DRAFT_4216at 22.969 kb on + strand, within EX28DRAFT_4216at 22.970 kb on - strand, within EX28DRAFT_4216at 23.107 kb on - strand, within EX28DRAFT_4216at 23.107 kb on - strand, within EX28DRAFT_4216at 23.392 kb on + strand, within EX28DRAFT_4216at 23.392 kb on + strand, within EX28DRAFT_4216at 23.392 kb on + strand, within EX28DRAFT_4216at 23.392 kb on + strand, within EX28DRAFT_4216at 23.392 kb on + strand, within EX28DRAFT_4216at 23.392 kb on + strand, within EX28DRAFT_4216at 23.393 kb on - strand, within EX28DRAFT_4216at 23.393 kb on - strand, within EX28DRAFT_4216at 23.393 kb on - strand, within EX28DRAFT_4216at 23.393 kb on - strand, within EX28DRAFT_4216at 23.393 kb on - strand, within EX28DRAFT_4216at 23.393 kb on - strand, within EX28DRAFT_4216at 23.393 kb on - strand, within EX28DRAFT_4216at 23.393 kb on - strand, within EX28DRAFT_4216at 23.394 kb on + strand, within EX28DRAFT_4216at 23.419 kb on + strand, within EX28DRAFT_4216at 23.419 kb on + strand, within EX28DRAFT_4216at 23.462 kb on - strand, within EX28DRAFT_4216at 23.462 kb on - strand, within EX28DRAFT_4216at 23.489 kb on + strand, within EX28DRAFT_4216

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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19,668 + EX28DRAFT_4213 0.72 +0.1
19,725 + EX28DRAFT_4213 0.80 +0.0
19,726 - EX28DRAFT_4213 0.80 -0.2
19,726 - EX28DRAFT_4213 0.80 +0.1
19,726 - EX28DRAFT_4213 0.80 +0.2
19,726 - EX28DRAFT_4213 0.80 -0.1
19,726 - EX28DRAFT_4213 0.80 -0.3
19,729 + EX28DRAFT_4213 0.81 -0.7
19,836 + +0.3
19,836 + +0.2
19,836 + +0.3
19,837 - +0.2
19,837 - -0.7
20,140 + EX28DRAFT_4214 0.63 +3.8
20,140 + EX28DRAFT_4214 0.63 +0.0
20,141 - EX28DRAFT_4214 0.64 -0.4
20,141 - EX28DRAFT_4214 0.64 +0.1
20,141 - EX28DRAFT_4214 0.64 -0.0
20,189 + EX28DRAFT_4214 0.78 +0.8
20,282 - -0.7
20,292 + -0.3
20,391 + -0.7
20,392 - +0.1
20,538 - -0.3
20,571 - EX28DRAFT_4215 0.11 -0.3
20,571 - EX28DRAFT_4215 0.11 -0.2
20,571 - EX28DRAFT_4215 0.11 +0.3
21,014 + EX28DRAFT_4215 0.30 -0.3
21,653 + EX28DRAFT_4215 0.58 -0.4
21,670 + EX28DRAFT_4215 0.59 -0.6
21,670 + EX28DRAFT_4215 0.59 +0.1
21,674 + EX28DRAFT_4215 0.59 -0.1
21,674 + EX28DRAFT_4215 0.59 +0.2
21,675 - EX28DRAFT_4215 0.59 -0.2
21,675 - EX28DRAFT_4215 0.59 +0.1
21,675 - EX28DRAFT_4215 0.59 +1.0
21,728 + EX28DRAFT_4215 0.61 -0.3
21,728 + EX28DRAFT_4215 0.61 -0.4
21,806 - EX28DRAFT_4215 0.65 -0.3
21,806 - EX28DRAFT_4215 0.65 +1.4
21,806 - EX28DRAFT_4215 0.65 -0.1
21,812 + EX28DRAFT_4215 0.65 +0.3
21,857 + EX28DRAFT_4215 0.67 +0.3
21,857 + EX28DRAFT_4215 0.67 -0.2
21,857 + EX28DRAFT_4215 0.67 +0.5
21,857 + EX28DRAFT_4215 0.67 -0.1
21,857 + EX28DRAFT_4215 0.67 +3.4
21,858 - EX28DRAFT_4215 0.67 +0.3
21,858 - EX28DRAFT_4215 0.67 +0.5
21,858 - EX28DRAFT_4215 0.67 -0.2
21,858 - EX28DRAFT_4215 0.67 -0.3
21,858 - EX28DRAFT_4215 0.67 +2.1
21,858 - EX28DRAFT_4215 0.67 -0.4
21,858 - EX28DRAFT_4215 0.67 +0.2
21,859 + EX28DRAFT_4215 0.67 +0.4
21,859 + EX28DRAFT_4215 0.67 +0.1
21,860 - EX28DRAFT_4215 0.67 +0.3
21,964 - EX28DRAFT_4215 0.72 +0.9
22,132 + EX28DRAFT_4215 0.79 -0.3
22,133 - EX28DRAFT_4215 0.79 +0.9
22,357 + EX28DRAFT_4215 0.89 +0.1
22,554 - -1.3
22,617 - +0.4
22,682 - +1.0
22,690 - +0.2
22,700 + +0.2
22,700 + +0.2
22,705 + +0.2
22,705 + +0.9
22,706 - +0.2
22,706 - +0.6
22,710 - +0.2
22,716 - -0.0
22,720 - -0.2
22,720 - +0.2
22,720 - +1.2
22,823 + -0.6
22,824 - -0.1
22,969 + EX28DRAFT_4216 0.11 +0.7
22,969 + EX28DRAFT_4216 0.11 -0.4
22,970 - EX28DRAFT_4216 0.11 -0.2
23,107 - EX28DRAFT_4216 0.20 -0.7
23,107 - EX28DRAFT_4216 0.20 +0.1
23,392 + EX28DRAFT_4216 0.39 +1.1
23,392 + EX28DRAFT_4216 0.39 -0.4
23,392 + EX28DRAFT_4216 0.39 -0.0
23,392 + EX28DRAFT_4216 0.39 -0.8
23,392 + EX28DRAFT_4216 0.39 -0.2
23,392 + EX28DRAFT_4216 0.39 +1.0
23,393 - EX28DRAFT_4216 0.39 +0.1
23,393 - EX28DRAFT_4216 0.39 -0.8
23,393 - EX28DRAFT_4216 0.39 +0.1
23,393 - EX28DRAFT_4216 0.39 +0.0
23,393 - EX28DRAFT_4216 0.39 -0.5
23,393 - EX28DRAFT_4216 0.39 -0.6
23,393 - EX28DRAFT_4216 0.39 -0.3
23,393 - EX28DRAFT_4216 0.39 -3.8
23,394 + EX28DRAFT_4216 0.39 +0.4
23,419 + EX28DRAFT_4216 0.40 +0.6
23,419 + EX28DRAFT_4216 0.40 +0.6
23,462 - EX28DRAFT_4216 0.43 +0.4
23,462 - EX28DRAFT_4216 0.43 -0.2
23,489 + EX28DRAFT_4216 0.45 -0.3

Or see this region's nucleotide sequence