Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4204 and EX28DRAFT_4205 overlap by 4 nucleotides EX28DRAFT_4205 and EX28DRAFT_4206 overlap by 1 nucleotides EX28DRAFT_4206 and EX28DRAFT_4207 overlap by 8 nucleotides EX28DRAFT_4207 and EX28DRAFT_4208 overlap by 4 nucleotides
EX28DRAFT_4204: EX28DRAFT_4204 - phosphonate C-P lyase system protein PhnG, at 12,623 to 13,075
_4204
EX28DRAFT_4205: EX28DRAFT_4205 - phosphonate C-P lyase system protein PhnH, at 13,072 to 13,656
_4205
EX28DRAFT_4206: EX28DRAFT_4206 - Uncharacterized enzyme of phosphonate metabolism, at 13,656 to 14,720
_4206
EX28DRAFT_4207: EX28DRAFT_4207 - Uncharacterized enzyme of phosphonate metabolism, at 14,713 to 15,558
_4207
EX28DRAFT_4208: EX28DRAFT_4208 - phosphonate C-P lyase system protein PhnK, at 15,555 to 16,310
_4208
Position (kb) 13
14
15 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 12.869 kb on + strand, within EX28DRAFT_4204 at 12.870 kb on - strand, within EX28DRAFT_4204 at 12.941 kb on + strand, within EX28DRAFT_4204 at 12.942 kb on - strand, within EX28DRAFT_4204 at 13.388 kb on + strand, within EX28DRAFT_4205 at 13.389 kb on - strand, within EX28DRAFT_4205 at 13.389 kb on - strand, within EX28DRAFT_4205 at 13.389 kb on - strand, within EX28DRAFT_4205 at 13.660 kb on - strand at 13.660 kb on - strand at 13.778 kb on - strand, within EX28DRAFT_4206 at 13.778 kb on - strand, within EX28DRAFT_4206 at 13.870 kb on + strand, within EX28DRAFT_4206 at 13.870 kb on + strand, within EX28DRAFT_4206 at 13.870 kb on + strand, within EX28DRAFT_4206 at 13.870 kb on + strand, within EX28DRAFT_4206 at 13.871 kb on - strand, within EX28DRAFT_4206 at 13.871 kb on - strand, within EX28DRAFT_4206 at 13.871 kb on - strand, within EX28DRAFT_4206 at 13.871 kb on - strand, within EX28DRAFT_4206 at 13.913 kb on + strand, within EX28DRAFT_4206 at 13.982 kb on + strand, within EX28DRAFT_4206 at 14.026 kb on - strand, within EX28DRAFT_4206 at 14.481 kb on + strand, within EX28DRAFT_4206 at 14.656 kb on - strand at 14.723 kb on + strand at 14.724 kb on - strand at 14.724 kb on - strand at 14.787 kb on + strand at 14.788 kb on - strand at 14.788 kb on - strand at 14.992 kb on - strand, within EX28DRAFT_4207 at 14.992 kb on - strand, within EX28DRAFT_4207 at 15.223 kb on + strand, within EX28DRAFT_4207 at 15.224 kb on - strand, within EX28DRAFT_4207 at 15.224 kb on - strand, within EX28DRAFT_4207 at 15.224 kb on - strand, within EX28DRAFT_4207 at 15.224 kb on - strand, within EX28DRAFT_4207 at 15.254 kb on - strand, within EX28DRAFT_4207 at 15.353 kb on - strand, within EX28DRAFT_4207 at 15.367 kb on + strand, within EX28DRAFT_4207 at 15.460 kb on + strand, within EX28DRAFT_4207 at 15.460 kb on + strand, within EX28DRAFT_4207 at 15.578 kb on + strand at 15.578 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 12,869 + EX28DRAFT_4204 0.54 -0.3 12,870 - EX28DRAFT_4204 0.55 +0.3 12,941 + EX28DRAFT_4204 0.70 -0.5 12,942 - EX28DRAFT_4204 0.70 -1.1 13,388 + EX28DRAFT_4205 0.54 -0.1 13,389 - EX28DRAFT_4205 0.54 +0.1 13,389 - EX28DRAFT_4205 0.54 -0.6 13,389 - EX28DRAFT_4205 0.54 +0.7 13,660 - +0.1 13,660 - +0.4 13,778 - EX28DRAFT_4206 0.11 -0.5 13,778 - EX28DRAFT_4206 0.11 -0.4 13,870 + EX28DRAFT_4206 0.20 +0.2 13,870 + EX28DRAFT_4206 0.20 +0.7 13,870 + EX28DRAFT_4206 0.20 -0.9 13,870 + EX28DRAFT_4206 0.20 -0.2 13,871 - EX28DRAFT_4206 0.20 +0.0 13,871 - EX28DRAFT_4206 0.20 -0.2 13,871 - EX28DRAFT_4206 0.20 +0.1 13,871 - EX28DRAFT_4206 0.20 +0.1 13,913 + EX28DRAFT_4206 0.24 -0.4 13,982 + EX28DRAFT_4206 0.31 -1.0 14,026 - EX28DRAFT_4206 0.35 -4.3 14,481 + EX28DRAFT_4206 0.77 +0.3 14,656 - -0.8 14,723 + -0.5 14,724 - +0.7 14,724 - -0.8 14,787 + +0.9 14,788 - -0.5 14,788 - +0.6 14,992 - EX28DRAFT_4207 0.33 +0.5 14,992 - EX28DRAFT_4207 0.33 -0.3 15,223 + EX28DRAFT_4207 0.60 -0.4 15,224 - EX28DRAFT_4207 0.60 -1.3 15,224 - EX28DRAFT_4207 0.60 +0.7 15,224 - EX28DRAFT_4207 0.60 +0.2 15,224 - EX28DRAFT_4207 0.60 +0.0 15,254 - EX28DRAFT_4207 0.64 -0.5 15,353 - EX28DRAFT_4207 0.76 +0.6 15,367 + EX28DRAFT_4207 0.77 -0.0 15,460 + EX28DRAFT_4207 0.88 +0.8 15,460 + EX28DRAFT_4207 0.88 +1.1 15,578 + -0.5 15,578 + +1.3
Or see this region's nucleotide sequence