Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4195 and EX28DRAFT_4196 are separated by 51 nucleotides EX28DRAFT_4196 and EX28DRAFT_4197 overlap by 4 nucleotides
EX28DRAFT_4195: EX28DRAFT_4195 - 2-keto-3-deoxygluconate transporter, at 3,361 to 4,353
_4195
EX28DRAFT_4196: EX28DRAFT_4196 - YjcZ-like protein, at 4,405 to 5,280
_4196
EX28DRAFT_4197: EX28DRAFT_4197 - Dynamin family, at 5,277 to 7,631
_4197
Position (kb) 4
5
6 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 3.491 kb on + strand, within EX28DRAFT_4195 at 3.570 kb on - strand, within EX28DRAFT_4195 at 3.718 kb on - strand, within EX28DRAFT_4195 at 3.736 kb on + strand, within EX28DRAFT_4195 at 3.737 kb on - strand, within EX28DRAFT_4195 at 4.244 kb on + strand, within EX28DRAFT_4195 at 4.245 kb on - strand, within EX28DRAFT_4195 at 4.286 kb on - strand at 4.306 kb on - strand at 4.468 kb on - strand at 4.563 kb on + strand, within EX28DRAFT_4196 at 4.564 kb on - strand, within EX28DRAFT_4196 at 4.655 kb on + strand, within EX28DRAFT_4196 at 4.655 kb on + strand, within EX28DRAFT_4196 at 4.764 kb on + strand, within EX28DRAFT_4196 at 4.902 kb on + strand, within EX28DRAFT_4196 at 5.233 kb on - strand at 5.235 kb on + strand at 5.236 kb on - strand at 5.361 kb on - strand at 5.536 kb on - strand, within EX28DRAFT_4197 at 5.558 kb on + strand, within EX28DRAFT_4197 at 5.559 kb on - strand, within EX28DRAFT_4197 at 5.568 kb on - strand, within EX28DRAFT_4197 at 5.568 kb on - strand, within EX28DRAFT_4197 at 5.580 kb on + strand, within EX28DRAFT_4197 at 5.580 kb on + strand, within EX28DRAFT_4197 at 5.580 kb on + strand, within EX28DRAFT_4197 at 5.581 kb on - strand, within EX28DRAFT_4197 at 5.597 kb on + strand, within EX28DRAFT_4197 at 5.603 kb on - strand, within EX28DRAFT_4197 at 5.623 kb on + strand, within EX28DRAFT_4197 at 5.623 kb on + strand, within EX28DRAFT_4197 at 5.623 kb on + strand, within EX28DRAFT_4197 at 5.736 kb on - strand, within EX28DRAFT_4197 at 5.759 kb on + strand, within EX28DRAFT_4197 at 5.880 kb on - strand, within EX28DRAFT_4197 at 5.880 kb on - strand, within EX28DRAFT_4197
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 3,491 + EX28DRAFT_4195 0.13 +0.3 3,570 - EX28DRAFT_4195 0.21 +0.2 3,718 - EX28DRAFT_4195 0.36 +0.1 3,736 + EX28DRAFT_4195 0.38 +0.4 3,737 - EX28DRAFT_4195 0.38 +0.8 4,244 + EX28DRAFT_4195 0.89 +0.3 4,245 - EX28DRAFT_4195 0.89 +0.2 4,286 - +0.7 4,306 - -0.2 4,468 - +0.2 4,563 + EX28DRAFT_4196 0.18 +0.6 4,564 - EX28DRAFT_4196 0.18 +0.6 4,655 + EX28DRAFT_4196 0.29 -0.2 4,655 + EX28DRAFT_4196 0.29 +0.2 4,764 + EX28DRAFT_4196 0.41 -0.0 4,902 + EX28DRAFT_4196 0.57 +0.5 5,233 - +0.6 5,235 + +0.1 5,236 - -0.7 5,361 - -0.0 5,536 - EX28DRAFT_4197 0.11 -0.5 5,558 + EX28DRAFT_4197 0.12 -2.6 5,559 - EX28DRAFT_4197 0.12 -0.9 5,568 - EX28DRAFT_4197 0.12 -0.4 5,568 - EX28DRAFT_4197 0.12 -1.1 5,580 + EX28DRAFT_4197 0.13 +1.3 5,580 + EX28DRAFT_4197 0.13 -0.2 5,580 + EX28DRAFT_4197 0.13 +0.9 5,581 - EX28DRAFT_4197 0.13 +1.1 5,597 + EX28DRAFT_4197 0.14 -3.8 5,603 - EX28DRAFT_4197 0.14 +1.3 5,623 + EX28DRAFT_4197 0.15 -0.1 5,623 + EX28DRAFT_4197 0.15 -0.8 5,623 + EX28DRAFT_4197 0.15 +0.1 5,736 - EX28DRAFT_4197 0.19 -0.3 5,759 + EX28DRAFT_4197 0.20 -0.2 5,880 - EX28DRAFT_4197 0.26 +0.4 5,880 - EX28DRAFT_4197 0.26 -0.5
Or see this region's nucleotide sequence