Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3394 and EX28DRAFT_3395 are separated by 75 nucleotides EX28DRAFT_3395 and EX28DRAFT_3396 are separated by 48 nucleotides EX28DRAFT_3396 and EX28DRAFT_3397 are separated by 176 nucleotides
EX28DRAFT_3394: EX28DRAFT_3394 - Permeases of the drug/metabolite transporter (DMT) superfamily, at 62,287 to 63,252
_3394
EX28DRAFT_3395: EX28DRAFT_3395 - AraC-type DNA-binding domain-containing proteins, at 63,328 to 64,152
_3395
EX28DRAFT_3396: EX28DRAFT_3396 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 64,201 to 65,244
_3396
EX28DRAFT_3397: EX28DRAFT_3397 - 3-oxoacyl-(acyl-carrier-protein) synthase, at 65,421 to 67,319
_3397
Position (kb) 64
65
66 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 63.233 kb on + strand at 63.233 kb on + strand at 63.233 kb on + strand at 63.234 kb on - strand at 63.234 kb on - strand at 63.234 kb on - strand at 63.235 kb on + strand at 63.235 kb on + strand at 63.235 kb on + strand at 63.235 kb on + strand at 63.235 kb on + strand at 63.236 kb on - strand at 63.236 kb on - strand at 63.236 kb on - strand at 63.236 kb on - strand at 63.246 kb on + strand at 63.269 kb on - strand at 63.269 kb on - strand at 63.272 kb on + strand at 63.272 kb on + strand at 63.272 kb on + strand at 63.273 kb on - strand at 63.288 kb on + strand at 63.288 kb on + strand at 63.289 kb on - strand at 63.289 kb on - strand at 63.314 kb on + strand at 63.367 kb on - strand at 63.397 kb on + strand at 63.397 kb on + strand at 63.603 kb on + strand, within EX28DRAFT_3395 at 63.605 kb on + strand, within EX28DRAFT_3395 at 63.605 kb on + strand, within EX28DRAFT_3395 at 63.605 kb on + strand, within EX28DRAFT_3395 at 63.606 kb on - strand, within EX28DRAFT_3395 at 63.606 kb on - strand, within EX28DRAFT_3395 at 63.606 kb on - strand, within EX28DRAFT_3395 at 63.621 kb on - strand, within EX28DRAFT_3395 at 63.712 kb on + strand, within EX28DRAFT_3395 at 63.811 kb on - strand, within EX28DRAFT_3395 at 63.863 kb on + strand, within EX28DRAFT_3395 at 63.863 kb on + strand, within EX28DRAFT_3395 at 63.863 kb on + strand, within EX28DRAFT_3395 at 63.863 kb on + strand, within EX28DRAFT_3395 at 63.934 kb on - strand, within EX28DRAFT_3395 at 64.056 kb on + strand, within EX28DRAFT_3395 at 64.057 kb on - strand, within EX28DRAFT_3395 at 64.129 kb on - strand at 64.234 kb on - strand at 64.264 kb on - strand at 64.385 kb on - strand, within EX28DRAFT_3396 at 64.497 kb on + strand, within EX28DRAFT_3396 at 64.562 kb on + strand, within EX28DRAFT_3396 at 64.627 kb on - strand, within EX28DRAFT_3396 at 64.701 kb on + strand, within EX28DRAFT_3396 at 64.702 kb on - strand, within EX28DRAFT_3396 at 64.952 kb on + strand, within EX28DRAFT_3396 at 64.952 kb on + strand, within EX28DRAFT_3396 at 64.952 kb on + strand, within EX28DRAFT_3396 at 64.956 kb on + strand, within EX28DRAFT_3396 at 64.956 kb on + strand, within EX28DRAFT_3396 at 64.986 kb on + strand, within EX28DRAFT_3396 at 64.987 kb on - strand, within EX28DRAFT_3396 at 64.987 kb on - strand, within EX28DRAFT_3396 at 64.987 kb on - strand, within EX28DRAFT_3396 at 65.004 kb on + strand, within EX28DRAFT_3396 at 65.005 kb on - strand, within EX28DRAFT_3396 at 65.039 kb on - strand, within EX28DRAFT_3396 at 65.050 kb on - strand, within EX28DRAFT_3396 at 65.064 kb on + strand, within EX28DRAFT_3396 at 65.065 kb on - strand, within EX28DRAFT_3396 at 65.144 kb on - strand at 65.148 kb on - strand at 65.148 kb on - strand at 65.151 kb on + strand at 65.227 kb on + strand at 65.253 kb on - strand at 65.359 kb on + strand at 65.378 kb on - strand at 65.437 kb on + strand at 65.475 kb on - strand at 65.617 kb on + strand, within EX28DRAFT_3397 at 65.676 kb on - strand, within EX28DRAFT_3397 at 65.788 kb on + strand, within EX28DRAFT_3397 at 65.789 kb on - strand, within EX28DRAFT_3397 at 65.846 kb on + strand, within EX28DRAFT_3397 at 65.847 kb on - strand, within EX28DRAFT_3397 at 66.040 kb on + strand, within EX28DRAFT_3397 at 66.041 kb on - strand, within EX28DRAFT_3397 at 66.213 kb on + strand, within EX28DRAFT_3397 at 66.213 kb on + strand, within EX28DRAFT_3397 at 66.214 kb on - strand, within EX28DRAFT_3397 at 66.214 kb on - strand, within EX28DRAFT_3397
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 63,233 + -0.2 63,233 + -0.4 63,233 + -0.4 63,234 - -0.1 63,234 - -1.0 63,234 - -0.5 63,235 + -0.1 63,235 + -0.1 63,235 + +0.2 63,235 + +0.2 63,235 + -0.2 63,236 - +1.8 63,236 - +1.6 63,236 - -0.5 63,236 - +1.6 63,246 + +0.5 63,269 - -0.6 63,269 - +0.4 63,272 + -0.6 63,272 + +0.2 63,272 + -0.5 63,273 - -0.3 63,288 + +1.0 63,288 + -0.3 63,289 - +0.3 63,289 - -0.5 63,314 + -0.1 63,367 - +0.3 63,397 + +0.7 63,397 + -0.6 63,603 + EX28DRAFT_3395 0.33 +0.5 63,605 + EX28DRAFT_3395 0.34 -0.0 63,605 + EX28DRAFT_3395 0.34 +0.2 63,605 + EX28DRAFT_3395 0.34 -0.5 63,606 - EX28DRAFT_3395 0.34 +0.1 63,606 - EX28DRAFT_3395 0.34 +0.2 63,606 - EX28DRAFT_3395 0.34 -1.4 63,621 - EX28DRAFT_3395 0.36 -0.7 63,712 + EX28DRAFT_3395 0.47 -0.0 63,811 - EX28DRAFT_3395 0.59 +0.1 63,863 + EX28DRAFT_3395 0.65 -0.3 63,863 + EX28DRAFT_3395 0.65 -1.2 63,863 + EX28DRAFT_3395 0.65 +0.9 63,863 + EX28DRAFT_3395 0.65 -0.5 63,934 - EX28DRAFT_3395 0.73 +1.4 64,056 + EX28DRAFT_3395 0.88 -0.6 64,057 - EX28DRAFT_3395 0.88 -0.8 64,129 - -0.4 64,234 - +0.3 64,264 - +0.6 64,385 - EX28DRAFT_3396 0.18 +0.2 64,497 + EX28DRAFT_3396 0.28 +0.4 64,562 + EX28DRAFT_3396 0.35 -1.4 64,627 - EX28DRAFT_3396 0.41 +0.0 64,701 + EX28DRAFT_3396 0.48 -1.3 64,702 - EX28DRAFT_3396 0.48 +0.0 64,952 + EX28DRAFT_3396 0.72 -0.2 64,952 + EX28DRAFT_3396 0.72 -0.7 64,952 + EX28DRAFT_3396 0.72 -0.1 64,956 + EX28DRAFT_3396 0.72 +0.9 64,956 + EX28DRAFT_3396 0.72 -3.8 64,986 + EX28DRAFT_3396 0.75 -2.2 64,987 - EX28DRAFT_3396 0.75 +0.5 64,987 - EX28DRAFT_3396 0.75 -0.7 64,987 - EX28DRAFT_3396 0.75 -1.9 65,004 + EX28DRAFT_3396 0.77 -1.4 65,005 - EX28DRAFT_3396 0.77 -0.4 65,039 - EX28DRAFT_3396 0.80 -0.7 65,050 - EX28DRAFT_3396 0.81 +0.7 65,064 + EX28DRAFT_3396 0.83 -0.4 65,065 - EX28DRAFT_3396 0.83 +2.6 65,144 - -0.4 65,148 - -0.6 65,148 - -0.7 65,151 + +0.2 65,227 + -0.3 65,253 - -0.4 65,359 + -0.3 65,378 - -0.0 65,437 + -1.1 65,475 - +0.5 65,617 + EX28DRAFT_3397 0.10 -0.1 65,676 - EX28DRAFT_3397 0.13 -1.2 65,788 + EX28DRAFT_3397 0.19 -0.2 65,789 - EX28DRAFT_3397 0.19 -0.1 65,846 + EX28DRAFT_3397 0.22 +0.8 65,847 - EX28DRAFT_3397 0.22 -0.5 66,040 + EX28DRAFT_3397 0.33 +0.3 66,041 - EX28DRAFT_3397 0.33 -0.7 66,213 + EX28DRAFT_3397 0.42 -0.2 66,213 + EX28DRAFT_3397 0.42 +3.0 66,214 - EX28DRAFT_3397 0.42 -0.6 66,214 - EX28DRAFT_3397 0.42 +0.5
Or see this region's nucleotide sequence