Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3140

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3139 and EX28DRAFT_3140 are separated by 408 nucleotidesEX28DRAFT_3140 and EX28DRAFT_3141 are separated by 38 nucleotidesEX28DRAFT_3141 and EX28DRAFT_3142 are separated by 42 nucleotides EX28DRAFT_3139: EX28DRAFT_3139 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor, at 439,206 to 440,726 _3139 EX28DRAFT_3140: EX28DRAFT_3140 - diamine aminotransferase apoenzyme (EC 2.6.1.29), at 441,135 to 442,541 _3140 EX28DRAFT_3141: EX28DRAFT_3141 - transcriptional regulator, XRE family with cupin sensor, at 442,580 to 443,182 _3141 EX28DRAFT_3142: EX28DRAFT_3142 - Uncharacterized conserved protein, at 443,225 to 443,911 _3142 Position (kb) 441 442 443Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 440.393 kb on + strand, within EX28DRAFT_3139at 440.393 kb on + strand, within EX28DRAFT_3139at 440.393 kb on + strand, within EX28DRAFT_3139at 440.393 kb on + strand, within EX28DRAFT_3139at 440.393 kb on + strand, within EX28DRAFT_3139at 440.394 kb on - strand, within EX28DRAFT_3139at 440.394 kb on - strand, within EX28DRAFT_3139at 440.394 kb on - strand, within EX28DRAFT_3139at 440.394 kb on - strand, within EX28DRAFT_3139at 440.394 kb on - strand, within EX28DRAFT_3139at 440.394 kb on - strand, within EX28DRAFT_3139at 440.395 kb on + strand, within EX28DRAFT_3139at 440.395 kb on + strand, within EX28DRAFT_3139at 440.396 kb on - strand, within EX28DRAFT_3139at 440.396 kb on - strand, within EX28DRAFT_3139at 440.564 kb on + strand, within EX28DRAFT_3139at 440.565 kb on - strand, within EX28DRAFT_3139at 440.565 kb on - strand, within EX28DRAFT_3139at 440.641 kb on + strandat 440.641 kb on + strandat 440.661 kb on - strandat 440.661 kb on - strandat 440.667 kb on + strandat 440.668 kb on - strandat 440.668 kb on - strandat 440.693 kb on - strandat 440.710 kb on + strandat 440.710 kb on + strandat 440.710 kb on + strandat 440.710 kb on + strandat 440.711 kb on - strandat 440.747 kb on + strandat 440.759 kb on - strandat 440.797 kb on + strandat 440.798 kb on - strandat 440.804 kb on - strandat 440.906 kb on + strandat 440.986 kb on - strandat 440.986 kb on - strandat 441.008 kb on - strandat 441.037 kb on + strandat 441.117 kb on + strandat 441.117 kb on + strandat 441.117 kb on + strandat 441.122 kb on - strandat 441.172 kb on + strandat 441.172 kb on + strandat 441.282 kb on + strand, within EX28DRAFT_3140at 441.287 kb on + strand, within EX28DRAFT_3140at 441.380 kb on + strand, within EX28DRAFT_3140at 441.589 kb on - strand, within EX28DRAFT_3140at 441.589 kb on - strand, within EX28DRAFT_3140at 441.600 kb on - strand, within EX28DRAFT_3140at 441.600 kb on - strand, within EX28DRAFT_3140at 441.708 kb on - strand, within EX28DRAFT_3140at 441.761 kb on + strand, within EX28DRAFT_3140at 441.840 kb on - strand, within EX28DRAFT_3140at 441.918 kb on + strand, within EX28DRAFT_3140at 442.279 kb on + strand, within EX28DRAFT_3140at 442.367 kb on + strand, within EX28DRAFT_3140at 442.367 kb on + strand, within EX28DRAFT_3140at 442.522 kb on + strandat 442.522 kb on + strandat 442.523 kb on - strandat 442.610 kb on - strandat 442.722 kb on - strand, within EX28DRAFT_3141at 442.814 kb on + strand, within EX28DRAFT_3141at 442.815 kb on - strand, within EX28DRAFT_3141at 443.042 kb on - strand, within EX28DRAFT_3141at 443.042 kb on - strand, within EX28DRAFT_3141at 443.224 kb on + strandat 443.224 kb on + strandat 443.224 kb on + strandat 443.225 kb on - strandat 443.225 kb on - strandat 443.225 kb on - strandat 443.247 kb on + strandat 443.247 kb on + strandat 443.247 kb on + strandat 443.530 kb on + strand, within EX28DRAFT_3142at 443.530 kb on + strand, within EX28DRAFT_3142at 443.534 kb on + strand, within EX28DRAFT_3142at 443.534 kb on + strand, within EX28DRAFT_3142at 443.534 kb on + strand, within EX28DRAFT_3142at 443.534 kb on + strand, within EX28DRAFT_3142at 443.534 kb on + strand, within EX28DRAFT_3142at 443.534 kb on + strand, within EX28DRAFT_3142at 443.534 kb on + strand, within EX28DRAFT_3142at 443.534 kb on + strand, within EX28DRAFT_3142at 443.535 kb on - strand, within EX28DRAFT_3142at 443.535 kb on - strand, within EX28DRAFT_3142at 443.535 kb on - strand, within EX28DRAFT_3142at 443.535 kb on - strand, within EX28DRAFT_3142at 443.535 kb on - strand, within EX28DRAFT_3142

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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440,393 + EX28DRAFT_3139 0.78 -0.2
440,393 + EX28DRAFT_3139 0.78 +0.2
440,393 + EX28DRAFT_3139 0.78 -0.1
440,393 + EX28DRAFT_3139 0.78 +0.3
440,393 + EX28DRAFT_3139 0.78 -0.3
440,394 - EX28DRAFT_3139 0.78 -0.1
440,394 - EX28DRAFT_3139 0.78 -3.1
440,394 - EX28DRAFT_3139 0.78 -1.0
440,394 - EX28DRAFT_3139 0.78 -0.0
440,394 - EX28DRAFT_3139 0.78 +3.4
440,394 - EX28DRAFT_3139 0.78 +0.3
440,395 + EX28DRAFT_3139 0.78 +0.1
440,395 + EX28DRAFT_3139 0.78 -0.3
440,396 - EX28DRAFT_3139 0.78 -0.1
440,396 - EX28DRAFT_3139 0.78 +0.1
440,564 + EX28DRAFT_3139 0.89 -1.7
440,565 - EX28DRAFT_3139 0.89 +0.4
440,565 - EX28DRAFT_3139 0.89 +0.4
440,641 + +0.1
440,641 + -0.0
440,661 - -0.1
440,661 - +0.1
440,667 + -1.2
440,668 - -0.8
440,668 - +0.1
440,693 - +1.4
440,710 + +0.7
440,710 + +0.9
440,710 + -0.3
440,710 + -0.2
440,711 - -0.3
440,747 + -0.3
440,759 - -0.3
440,797 + +0.1
440,798 - +1.0
440,804 - +2.2
440,906 + -0.2
440,986 - -1.9
440,986 - -0.0
441,008 - +0.5
441,037 + +0.2
441,117 + -1.0
441,117 + -0.2
441,117 + +0.3
441,122 - +0.1
441,172 + -0.3
441,172 + -0.5
441,282 + EX28DRAFT_3140 0.10 +2.4
441,287 + EX28DRAFT_3140 0.11 -0.1
441,380 + EX28DRAFT_3140 0.17 -0.5
441,589 - EX28DRAFT_3140 0.32 -0.2
441,589 - EX28DRAFT_3140 0.32 -0.6
441,600 - EX28DRAFT_3140 0.33 -1.2
441,600 - EX28DRAFT_3140 0.33 -0.2
441,708 - EX28DRAFT_3140 0.41 +1.5
441,761 + EX28DRAFT_3140 0.44 -4.8
441,840 - EX28DRAFT_3140 0.50 -0.6
441,918 + EX28DRAFT_3140 0.56 -0.3
442,279 + EX28DRAFT_3140 0.81 +0.0
442,367 + EX28DRAFT_3140 0.88 -0.2
442,367 + EX28DRAFT_3140 0.88 -0.3
442,522 + -0.2
442,522 + +0.2
442,523 - +0.1
442,610 - -0.1
442,722 - EX28DRAFT_3141 0.24 +0.0
442,814 + EX28DRAFT_3141 0.39 +0.3
442,815 - EX28DRAFT_3141 0.39 +0.2
443,042 - EX28DRAFT_3141 0.77 -0.4
443,042 - EX28DRAFT_3141 0.77 -0.1
443,224 + -0.3
443,224 + -0.2
443,224 + -0.1
443,225 - +0.3
443,225 - +0.6
443,225 - -0.1
443,247 + +0.8
443,247 + +0.7
443,247 + -3.4
443,530 + EX28DRAFT_3142 0.44 +0.2
443,530 + EX28DRAFT_3142 0.44 -0.1
443,534 + EX28DRAFT_3142 0.45 +0.1
443,534 + EX28DRAFT_3142 0.45 -0.0
443,534 + EX28DRAFT_3142 0.45 -0.0
443,534 + EX28DRAFT_3142 0.45 +0.2
443,534 + EX28DRAFT_3142 0.45 -0.7
443,534 + EX28DRAFT_3142 0.45 -0.6
443,534 + EX28DRAFT_3142 0.45 -0.0
443,534 + EX28DRAFT_3142 0.45 +1.0
443,535 - EX28DRAFT_3142 0.45 +0.1
443,535 - EX28DRAFT_3142 0.45 -0.5
443,535 - EX28DRAFT_3142 0.45 +0.3
443,535 - EX28DRAFT_3142 0.45 +1.0
443,535 - EX28DRAFT_3142 0.45 +0.6

Or see this region's nucleotide sequence