Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3038

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3035 and EX28DRAFT_3036 are separated by 52 nucleotidesEX28DRAFT_3036 and EX28DRAFT_3037 are separated by 155 nucleotidesEX28DRAFT_3037 and EX28DRAFT_3038 are separated by 128 nucleotidesEX28DRAFT_3038 and EX28DRAFT_3039 are separated by 231 nucleotides EX28DRAFT_3035: EX28DRAFT_3035 - hypothetical protein, at 345,530 to 345,979 _3035 EX28DRAFT_3036: EX28DRAFT_3036 - RNA, at 346,032 to 346,118 _3036 EX28DRAFT_3037: EX28DRAFT_3037 - hypothetical protein, at 346,274 to 346,528 _3037 EX28DRAFT_3038: EX28DRAFT_3038 - methyl-accepting chemotaxis sensory transducer with TarH sensor, at 346,657 to 348,204 _3038 EX28DRAFT_3039: EX28DRAFT_3039 - Predicted oxidoreductases (related to aryl-alcohol dehydrogenases), at 348,436 to 349,476 _3039 Position (kb) 346 347 348 349Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 345.690 kb on + strand, within EX28DRAFT_3035at 345.691 kb on - strand, within EX28DRAFT_3035at 345.879 kb on + strand, within EX28DRAFT_3035at 345.886 kb on - strand, within EX28DRAFT_3035at 346.061 kb on + strand, within EX28DRAFT_3036at 346.062 kb on - strand, within EX28DRAFT_3036at 346.090 kb on + strand, within EX28DRAFT_3036at 346.139 kb on + strandat 346.139 kb on + strandat 346.140 kb on - strandat 346.140 kb on - strandat 346.140 kb on - strandat 346.140 kb on - strandat 346.140 kb on - strandat 346.216 kb on + strandat 346.279 kb on - strandat 346.279 kb on - strandat 346.282 kb on + strandat 346.282 kb on + strandat 346.282 kb on + strandat 346.282 kb on + strandat 346.283 kb on - strandat 346.283 kb on - strandat 346.514 kb on + strandat 346.515 kb on - strandat 346.541 kb on + strandat 346.541 kb on + strandat 346.571 kb on - strandat 346.581 kb on + strandat 346.622 kb on + strandat 346.623 kb on - strandat 346.623 kb on - strandat 346.658 kb on + strandat 346.934 kb on - strand, within EX28DRAFT_3038at 347.386 kb on + strand, within EX28DRAFT_3038at 347.387 kb on - strand, within EX28DRAFT_3038at 347.387 kb on - strand, within EX28DRAFT_3038at 347.388 kb on + strand, within EX28DRAFT_3038at 347.442 kb on + strand, within EX28DRAFT_3038at 348.058 kb on - strandat 348.116 kb on + strandat 348.117 kb on - strandat 348.140 kb on - strandat 348.140 kb on - strandat 348.140 kb on - strandat 348.198 kb on + strandat 348.198 kb on + strandat 348.199 kb on - strandat 348.199 kb on - strandat 348.199 kb on - strandat 348.204 kb on + strandat 348.204 kb on + strandat 348.205 kb on - strandat 348.246 kb on + strandat 348.249 kb on + strandat 348.249 kb on + strandat 348.280 kb on + strandat 348.281 kb on - strandat 348.302 kb on + strandat 348.307 kb on - strandat 348.345 kb on + strandat 348.357 kb on + strandat 348.365 kb on + strandat 348.365 kb on + strandat 348.365 kb on + strandat 348.366 kb on - strandat 348.380 kb on + strandat 348.471 kb on + strandat 348.472 kb on - strandat 348.479 kb on - strandat 348.479 kb on - strandat 348.538 kb on - strandat 348.627 kb on + strand, within EX28DRAFT_3039at 348.632 kb on - strand, within EX28DRAFT_3039at 348.714 kb on + strand, within EX28DRAFT_3039at 348.774 kb on + strand, within EX28DRAFT_3039at 348.779 kb on - strand, within EX28DRAFT_3039at 348.826 kb on + strand, within EX28DRAFT_3039at 348.827 kb on - strand, within EX28DRAFT_3039at 348.834 kb on + strand, within EX28DRAFT_3039at 348.925 kb on + strand, within EX28DRAFT_3039at 348.925 kb on + strand, within EX28DRAFT_3039at 348.925 kb on + strand, within EX28DRAFT_3039at 349.022 kb on - strand, within EX28DRAFT_3039at 349.022 kb on - strand, within EX28DRAFT_3039at 349.135 kb on + strand, within EX28DRAFT_3039at 349.183 kb on - strand, within EX28DRAFT_3039

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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345,690 + EX28DRAFT_3035 0.36 -0.2
345,691 - EX28DRAFT_3035 0.36 +0.0
345,879 + EX28DRAFT_3035 0.78 +0.1
345,886 - EX28DRAFT_3035 0.79 +0.5
346,061 + EX28DRAFT_3036 0.33 +0.5
346,062 - EX28DRAFT_3036 0.34 +0.4
346,090 + EX28DRAFT_3036 0.67 -0.3
346,139 + +0.1
346,139 + -0.1
346,140 - +0.7
346,140 - +0.1
346,140 - -0.2
346,140 - +0.2
346,140 - -0.2
346,216 + -0.1
346,279 - +0.0
346,279 - -0.3
346,282 + -0.2
346,282 + +0.3
346,282 + -0.1
346,282 + -2.8
346,283 - -0.4
346,283 - +0.4
346,514 + -0.1
346,515 - -0.3
346,541 + +0.4
346,541 + -0.1
346,571 - -0.3
346,581 + -0.4
346,622 + +0.4
346,623 - -0.2
346,623 - -0.3
346,658 + +3.4
346,934 - EX28DRAFT_3038 0.18 -0.5
347,386 + EX28DRAFT_3038 0.47 +0.5
347,387 - EX28DRAFT_3038 0.47 +0.5
347,387 - EX28DRAFT_3038 0.47 +0.2
347,388 + EX28DRAFT_3038 0.47 +0.3
347,442 + EX28DRAFT_3038 0.51 +0.3
348,058 - -0.7
348,116 + +0.1
348,117 - -0.3
348,140 - +0.3
348,140 - -0.2
348,140 - +0.4
348,198 + +0.1
348,198 + -0.1
348,199 - -0.8
348,199 - -0.3
348,199 - -0.4
348,204 + +2.9
348,204 + +0.0
348,205 - +0.5
348,246 + -1.7
348,249 + +0.0
348,249 + -0.1
348,280 + +0.1
348,281 - +0.1
348,302 + +1.3
348,307 - -1.2
348,345 + -0.0
348,357 + -0.3
348,365 + -1.7
348,365 + +0.0
348,365 + +0.4
348,366 - -0.1
348,380 + -1.2
348,471 + +0.0
348,472 - -1.5
348,479 - -0.7
348,479 - +0.4
348,538 - -0.5
348,627 + EX28DRAFT_3039 0.18 +0.9
348,632 - EX28DRAFT_3039 0.19 +0.3
348,714 + EX28DRAFT_3039 0.27 +0.2
348,774 + EX28DRAFT_3039 0.32 -0.1
348,779 - EX28DRAFT_3039 0.33 -0.3
348,826 + EX28DRAFT_3039 0.37 +0.5
348,827 - EX28DRAFT_3039 0.38 +0.2
348,834 + EX28DRAFT_3039 0.38 +0.1
348,925 + EX28DRAFT_3039 0.47 +0.6
348,925 + EX28DRAFT_3039 0.47 -0.1
348,925 + EX28DRAFT_3039 0.47 +0.1
349,022 - EX28DRAFT_3039 0.56 +0.9
349,022 - EX28DRAFT_3039 0.56 +0.2
349,135 + EX28DRAFT_3039 0.67 +1.4
349,183 - EX28DRAFT_3039 0.72 -0.3

Or see this region's nucleotide sequence