Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2870 and EX28DRAFT_2871 are separated by 295 nucleotides EX28DRAFT_2871 and EX28DRAFT_2872 are separated by 24 nucleotides EX28DRAFT_2872 and EX28DRAFT_2873 overlap by 4 nucleotides
EX28DRAFT_2870: EX28DRAFT_2870 - D-galactonate transporter, at 177,239 to 178,594
_2870
EX28DRAFT_2871: EX28DRAFT_2871 - Flavodoxins, at 178,890 to 179,339
_2871
EX28DRAFT_2872: EX28DRAFT_2872 - Pseudouridylate synthases, 23S RNA-specific, at 179,364 to 180,140
_2872
EX28DRAFT_2873: EX28DRAFT_2873 - Uncharacterized protein conserved in bacteria, at 180,137 to 180,466
_2873
Position (kb) 178
179
180 Strain fitness (log2 ratio) -1
0
1
2 at 177.916 kb on + strand, within EX28DRAFT_2870 at 177.917 kb on - strand, within EX28DRAFT_2870 at 177.917 kb on - strand, within EX28DRAFT_2870 at 177.917 kb on - strand, within EX28DRAFT_2870 at 177.917 kb on - strand, within EX28DRAFT_2870 at 177.946 kb on - strand, within EX28DRAFT_2870 at 178.277 kb on - strand, within EX28DRAFT_2870 at 178.316 kb on - strand, within EX28DRAFT_2870 at 178.342 kb on + strand, within EX28DRAFT_2870 at 178.392 kb on + strand, within EX28DRAFT_2870 at 178.393 kb on - strand, within EX28DRAFT_2870 at 178.393 kb on - strand, within EX28DRAFT_2870 at 178.419 kb on + strand, within EX28DRAFT_2870 at 178.497 kb on + strand at 178.497 kb on + strand at 178.497 kb on + strand at 178.502 kb on - strand at 178.583 kb on + strand at 178.584 kb on - strand at 178.584 kb on - strand at 178.584 kb on - strand at 178.589 kb on - strand at 178.589 kb on - strand at 178.613 kb on + strand at 178.613 kb on + strand at 178.614 kb on - strand at 178.704 kb on + strand at 178.705 kb on - strand at 178.705 kb on - strand at 178.705 kb on - strand at 178.706 kb on + strand at 178.721 kb on + strand at 178.722 kb on - strand at 178.724 kb on - strand at 178.767 kb on + strand at 178.767 kb on + strand at 178.768 kb on - strand at 178.768 kb on - strand at 178.768 kb on - strand at 178.776 kb on + strand at 178.776 kb on + strand at 178.776 kb on + strand at 178.777 kb on - strand at 178.790 kb on + strand at 178.791 kb on - strand at 178.891 kb on + strand at 178.891 kb on + strand at 178.891 kb on + strand at 178.891 kb on + strand at 178.892 kb on - strand at 178.896 kb on - strand at 179.081 kb on - strand, within EX28DRAFT_2871 at 179.115 kb on - strand, within EX28DRAFT_2871 at 179.188 kb on + strand, within EX28DRAFT_2871 at 179.188 kb on + strand, within EX28DRAFT_2871 at 179.188 kb on + strand, within EX28DRAFT_2871 at 179.189 kb on - strand, within EX28DRAFT_2871 at 179.189 kb on - strand, within EX28DRAFT_2871 at 179.192 kb on + strand, within EX28DRAFT_2871 at 179.193 kb on - strand, within EX28DRAFT_2871 at 179.193 kb on - strand, within EX28DRAFT_2871 at 179.193 kb on - strand, within EX28DRAFT_2871 at 179.268 kb on + strand, within EX28DRAFT_2871 at 179.269 kb on - strand, within EX28DRAFT_2871 at 179.269 kb on - strand, within EX28DRAFT_2871 at 179.269 kb on - strand, within EX28DRAFT_2871 at 179.343 kb on - strand at 179.343 kb on - strand at 179.343 kb on - strand at 180.302 kb on + strand, within EX28DRAFT_2873
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 177,916 + EX28DRAFT_2870 0.50 +0.1 177,917 - EX28DRAFT_2870 0.50 +0.0 177,917 - EX28DRAFT_2870 0.50 -0.4 177,917 - EX28DRAFT_2870 0.50 +0.1 177,917 - EX28DRAFT_2870 0.50 +0.2 177,946 - EX28DRAFT_2870 0.52 +0.9 178,277 - EX28DRAFT_2870 0.77 +1.7 178,316 - EX28DRAFT_2870 0.79 -0.3 178,342 + EX28DRAFT_2870 0.81 +0.3 178,392 + EX28DRAFT_2870 0.85 -0.0 178,393 - EX28DRAFT_2870 0.85 -0.5 178,393 - EX28DRAFT_2870 0.85 -0.4 178,419 + EX28DRAFT_2870 0.87 -0.0 178,497 + +0.6 178,497 + -0.0 178,497 + -0.1 178,502 - -0.1 178,583 + -0.4 178,584 - +0.2 178,584 - -0.9 178,584 - -0.7 178,589 - -0.1 178,589 - +0.2 178,613 + +0.5 178,613 + +0.2 178,614 - +1.3 178,704 + +1.0 178,705 - +0.5 178,705 - -0.2 178,705 - +0.5 178,706 + +0.9 178,721 + +0.7 178,722 - -0.3 178,724 - +0.8 178,767 + +0.4 178,767 + -0.6 178,768 - +0.6 178,768 - -0.2 178,768 - +0.3 178,776 + +1.2 178,776 + +0.1 178,776 + -0.5 178,777 - +0.6 178,790 + -0.6 178,791 - -1.2 178,891 + +0.0 178,891 + +0.6 178,891 + +0.6 178,891 + -0.1 178,892 - +0.5 178,896 - +1.2 179,081 - EX28DRAFT_2871 0.42 -0.2 179,115 - EX28DRAFT_2871 0.50 +0.2 179,188 + EX28DRAFT_2871 0.66 +0.1 179,188 + EX28DRAFT_2871 0.66 -0.0 179,188 + EX28DRAFT_2871 0.66 +0.0 179,189 - EX28DRAFT_2871 0.66 +0.4 179,189 - EX28DRAFT_2871 0.66 +2.3 179,192 + EX28DRAFT_2871 0.67 +0.0 179,193 - EX28DRAFT_2871 0.67 +0.6 179,193 - EX28DRAFT_2871 0.67 +1.6 179,193 - EX28DRAFT_2871 0.67 +0.3 179,268 + EX28DRAFT_2871 0.84 +0.4 179,269 - EX28DRAFT_2871 0.84 +0.3 179,269 - EX28DRAFT_2871 0.84 +0.1 179,269 - EX28DRAFT_2871 0.84 -0.5 179,343 - -0.4 179,343 - +0.2 179,343 - +0.6 180,302 + EX28DRAFT_2873 0.50 -0.5
Or see this region's nucleotide sequence