Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2866 and EX28DRAFT_2867 are separated by 95 nucleotides EX28DRAFT_2867 and EX28DRAFT_2868 are separated by 77 nucleotides
EX28DRAFT_2866: EX28DRAFT_2866 - Uncharacterized domain of BarA-like signal transduction histidine kinases, at 170,474 to 173,233
_2866
EX28DRAFT_2867: EX28DRAFT_2867 - glycerate kinase, at 173,329 to 174,468
_2867
EX28DRAFT_2868: EX28DRAFT_2868 - glucarate dehydratase, at 174,546 to 175,883
_2868
Position (kb) 173
174
175 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1 at 172.330 kb on + strand, within EX28DRAFT_2866 at 172.419 kb on - strand, within EX28DRAFT_2866 at 172.419 kb on - strand, within EX28DRAFT_2866 at 172.498 kb on + strand, within EX28DRAFT_2866 at 172.629 kb on + strand, within EX28DRAFT_2866 at 172.629 kb on + strand, within EX28DRAFT_2866 at 172.629 kb on + strand, within EX28DRAFT_2866 at 172.629 kb on + strand, within EX28DRAFT_2866 at 172.630 kb on - strand, within EX28DRAFT_2866 at 172.630 kb on - strand, within EX28DRAFT_2866 at 172.630 kb on - strand, within EX28DRAFT_2866 at 172.630 kb on - strand, within EX28DRAFT_2866 at 172.630 kb on - strand, within EX28DRAFT_2866 at 172.772 kb on + strand, within EX28DRAFT_2866 at 172.819 kb on - strand, within EX28DRAFT_2866 at 172.851 kb on - strand, within EX28DRAFT_2866 at 172.851 kb on - strand, within EX28DRAFT_2866 at 172.999 kb on + strand at 173.220 kb on + strand at 173.236 kb on + strand at 173.237 kb on - strand at 173.237 kb on - strand at 173.269 kb on - strand at 173.330 kb on + strand at 173.331 kb on - strand at 173.331 kb on - strand at 173.331 kb on - strand at 173.432 kb on + strand at 173.641 kb on + strand, within EX28DRAFT_2867 at 173.642 kb on - strand, within EX28DRAFT_2867 at 173.784 kb on - strand, within EX28DRAFT_2867 at 173.784 kb on - strand, within EX28DRAFT_2867 at 173.849 kb on - strand, within EX28DRAFT_2867 at 174.084 kb on + strand, within EX28DRAFT_2867 at 174.084 kb on + strand, within EX28DRAFT_2867 at 174.084 kb on + strand, within EX28DRAFT_2867 at 174.085 kb on - strand, within EX28DRAFT_2867 at 174.117 kb on + strand, within EX28DRAFT_2867 at 174.118 kb on - strand, within EX28DRAFT_2867 at 174.156 kb on + strand, within EX28DRAFT_2867 at 174.401 kb on - strand at 174.440 kb on + strand at 174.441 kb on - strand at 174.441 kb on - strand at 174.480 kb on - strand at 174.485 kb on + strand at 174.486 kb on - strand at 174.486 kb on - strand at 174.486 kb on - strand at 174.503 kb on + strand at 174.513 kb on - strand at 174.547 kb on + strand at 174.552 kb on + strand at 174.598 kb on + strand at 174.750 kb on - strand, within EX28DRAFT_2868 at 174.866 kb on + strand, within EX28DRAFT_2868 at 174.866 kb on + strand, within EX28DRAFT_2868 at 174.867 kb on - strand, within EX28DRAFT_2868 at 175.284 kb on - strand, within EX28DRAFT_2868 at 175.291 kb on + strand, within EX28DRAFT_2868 at 175.439 kb on - strand, within EX28DRAFT_2868
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 172,330 + EX28DRAFT_2866 0.67 +0.9 172,419 - EX28DRAFT_2866 0.70 +1.1 172,419 - EX28DRAFT_2866 0.70 -0.1 172,498 + EX28DRAFT_2866 0.73 +0.3 172,629 + EX28DRAFT_2866 0.78 +1.2 172,629 + EX28DRAFT_2866 0.78 +0.1 172,629 + EX28DRAFT_2866 0.78 +0.7 172,629 + EX28DRAFT_2866 0.78 +1.4 172,630 - EX28DRAFT_2866 0.78 +0.4 172,630 - EX28DRAFT_2866 0.78 -0.3 172,630 - EX28DRAFT_2866 0.78 +0.5 172,630 - EX28DRAFT_2866 0.78 -1.0 172,630 - EX28DRAFT_2866 0.78 -1.6 172,772 + EX28DRAFT_2866 0.83 +1.2 172,819 - EX28DRAFT_2866 0.85 +0.5 172,851 - EX28DRAFT_2866 0.86 +0.1 172,851 - EX28DRAFT_2866 0.86 +1.5 172,999 + +0.7 173,220 + -0.5 173,236 + -0.2 173,237 - -0.3 173,237 - -0.0 173,269 - +0.8 173,330 + +0.2 173,331 - +0.3 173,331 - +0.5 173,331 - -1.8 173,432 + -6.0 173,641 + EX28DRAFT_2867 0.27 -4.7 173,642 - EX28DRAFT_2867 0.27 -6.1 173,784 - EX28DRAFT_2867 0.40 -4.1 173,784 - EX28DRAFT_2867 0.40 -5.8 173,849 - EX28DRAFT_2867 0.46 -3.3 174,084 + EX28DRAFT_2867 0.66 -3.3 174,084 + EX28DRAFT_2867 0.66 -4.4 174,084 + EX28DRAFT_2867 0.66 -4.0 174,085 - EX28DRAFT_2867 0.66 -4.2 174,117 + EX28DRAFT_2867 0.69 -3.6 174,118 - EX28DRAFT_2867 0.69 -6.6 174,156 + EX28DRAFT_2867 0.73 -2.9 174,401 - -7.1 174,440 + -4.9 174,441 - -5.9 174,441 - -3.5 174,480 - +0.3 174,485 + -1.9 174,486 - +0.2 174,486 - -0.6 174,486 - +0.8 174,503 + -1.2 174,513 - +0.2 174,547 + -0.5 174,552 + -0.8 174,598 + -0.1 174,750 - EX28DRAFT_2868 0.15 +0.0 174,866 + EX28DRAFT_2868 0.24 -0.5 174,866 + EX28DRAFT_2868 0.24 +1.3 174,867 - EX28DRAFT_2868 0.24 +1.1 175,284 - EX28DRAFT_2868 0.55 -0.0 175,291 + EX28DRAFT_2868 0.56 +0.5 175,439 - EX28DRAFT_2868 0.67 +0.3
Or see this region's nucleotide sequence