Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2857 and EX28DRAFT_2858 are separated by 165 nucleotides EX28DRAFT_2858 and EX28DRAFT_2859 overlap by 44 nucleotides EX28DRAFT_2859 and EX28DRAFT_2860 are separated by 219 nucleotides
EX28DRAFT_2857: EX28DRAFT_2857 - PTS system, glucose-like IIB component, at 158,663 to 160,222
_2857
EX28DRAFT_2858: EX28DRAFT_2858 - transcriptional regulator, RpiR family, at 160,388 to 161,212
_2858
EX28DRAFT_2859: EX28DRAFT_2859 - hypothetical protein, at 161,169 to 161,351
_2859
EX28DRAFT_2860: EX28DRAFT_2860 - Male sterility protein, at 161,571 to 162,680
_2860
Position (kb) 161
162 Strain fitness (log2 ratio) -2
-1
0
1 at 160.357 kb on + strand at 160.358 kb on - strand at 160.377 kb on - strand at 160.500 kb on - strand, within EX28DRAFT_2858 at 160.587 kb on - strand, within EX28DRAFT_2858 at 160.775 kb on + strand, within EX28DRAFT_2858 at 160.817 kb on + strand, within EX28DRAFT_2858 at 161.073 kb on + strand, within EX28DRAFT_2858 at 161.073 kb on + strand, within EX28DRAFT_2858 at 161.095 kb on + strand, within EX28DRAFT_2858 at 161.249 kb on + strand, within EX28DRAFT_2859 at 161.249 kb on + strand, within EX28DRAFT_2859 at 161.555 kb on + strand at 161.570 kb on - strand at 161.581 kb on + strand at 161.768 kb on + strand, within EX28DRAFT_2860 at 161.769 kb on - strand, within EX28DRAFT_2860 at 161.772 kb on - strand, within EX28DRAFT_2860 at 161.846 kb on + strand, within EX28DRAFT_2860 at 161.847 kb on - strand, within EX28DRAFT_2860 at 162.058 kb on - strand, within EX28DRAFT_2860 at 162.225 kb on - strand, within EX28DRAFT_2860 at 162.267 kb on + strand, within EX28DRAFT_2860 at 162.287 kb on - strand, within EX28DRAFT_2860
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 160,357 + +0.1 160,358 - +0.6 160,377 - +0.2 160,500 - EX28DRAFT_2858 0.14 -1.0 160,587 - EX28DRAFT_2858 0.24 +0.1 160,775 + EX28DRAFT_2858 0.47 -1.8 160,817 + EX28DRAFT_2858 0.52 +0.1 161,073 + EX28DRAFT_2858 0.83 +0.1 161,073 + EX28DRAFT_2858 0.83 +0.3 161,095 + EX28DRAFT_2858 0.86 +0.3 161,249 + EX28DRAFT_2859 0.44 -1.0 161,249 + EX28DRAFT_2859 0.44 -1.3 161,555 + +0.0 161,570 - -0.5 161,581 + +1.4 161,768 + EX28DRAFT_2860 0.18 +0.1 161,769 - EX28DRAFT_2860 0.18 +0.2 161,772 - EX28DRAFT_2860 0.18 -0.3 161,846 + EX28DRAFT_2860 0.25 +0.1 161,847 - EX28DRAFT_2860 0.25 +0.5 162,058 - EX28DRAFT_2860 0.44 +0.0 162,225 - EX28DRAFT_2860 0.59 -0.5 162,267 + EX28DRAFT_2860 0.63 +0.1 162,287 - EX28DRAFT_2860 0.65 -0.5
Or see this region's nucleotide sequence