Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2798 and EX28DRAFT_2799 are separated by 186 nucleotides EX28DRAFT_2799 and EX28DRAFT_2800 overlap by 4 nucleotides
EX28DRAFT_2798: EX28DRAFT_2798 - Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains, at 99,958 to 101,472
_2798
EX28DRAFT_2799: EX28DRAFT_2799 - Uncharacterized flavoproteins, at 101,659 to 103,107
_2799
EX28DRAFT_2800: EX28DRAFT_2800 - Pyridine nucleotide-disulphide oxidoreductase, at 103,104 to 104,237
_2800
Position (kb) 101
102
103
104 Strain fitness (log2 ratio) -1
0
1
2 at 100.751 kb on + strand, within EX28DRAFT_2798 at 100.751 kb on + strand, within EX28DRAFT_2798 at 101.002 kb on + strand, within EX28DRAFT_2798 at 101.472 kb on + strand at 101.473 kb on - strand at 101.563 kb on + strand at 101.641 kb on + strand at 101.658 kb on + strand at 101.658 kb on + strand at 101.658 kb on + strand at 101.659 kb on - strand at 101.665 kb on - strand at 101.770 kb on + strand at 101.771 kb on - strand at 101.771 kb on - strand at 101.878 kb on + strand, within EX28DRAFT_2799 at 101.878 kb on + strand, within EX28DRAFT_2799 at 101.878 kb on + strand, within EX28DRAFT_2799 at 101.879 kb on - strand, within EX28DRAFT_2799 at 101.879 kb on - strand, within EX28DRAFT_2799 at 101.939 kb on - strand, within EX28DRAFT_2799 at 101.939 kb on - strand, within EX28DRAFT_2799 at 101.956 kb on - strand, within EX28DRAFT_2799 at 101.956 kb on - strand, within EX28DRAFT_2799 at 101.960 kb on - strand, within EX28DRAFT_2799 at 101.960 kb on - strand, within EX28DRAFT_2799 at 101.960 kb on - strand, within EX28DRAFT_2799 at 102.121 kb on + strand, within EX28DRAFT_2799 at 102.173 kb on - strand, within EX28DRAFT_2799 at 102.241 kb on + strand, within EX28DRAFT_2799 at 102.371 kb on + strand, within EX28DRAFT_2799 at 102.382 kb on + strand, within EX28DRAFT_2799 at 102.403 kb on + strand, within EX28DRAFT_2799 at 102.540 kb on + strand, within EX28DRAFT_2799 at 102.792 kb on + strand, within EX28DRAFT_2799 at 103.069 kb on - strand at 103.240 kb on + strand, within EX28DRAFT_2800 at 103.241 kb on - strand, within EX28DRAFT_2800 at 103.253 kb on + strand, within EX28DRAFT_2800 at 103.495 kb on - strand, within EX28DRAFT_2800 at 103.495 kb on - strand, within EX28DRAFT_2800 at 103.596 kb on - strand, within EX28DRAFT_2800 at 103.628 kb on + strand, within EX28DRAFT_2800 at 103.628 kb on + strand, within EX28DRAFT_2800 at 103.628 kb on + strand, within EX28DRAFT_2800 at 103.629 kb on - strand, within EX28DRAFT_2800 at 103.629 kb on - strand, within EX28DRAFT_2800 at 103.629 kb on - strand, within EX28DRAFT_2800 at 103.629 kb on - strand, within EX28DRAFT_2800 at 103.629 kb on - strand, within EX28DRAFT_2800 at 103.658 kb on - strand, within EX28DRAFT_2800 at 103.874 kb on - strand, within EX28DRAFT_2800 at 103.877 kb on + strand, within EX28DRAFT_2800 at 103.877 kb on + strand, within EX28DRAFT_2800 at 104.063 kb on - strand, within EX28DRAFT_2800
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 100,751 + EX28DRAFT_2798 0.52 +0.1 100,751 + EX28DRAFT_2798 0.52 +0.9 101,002 + EX28DRAFT_2798 0.69 -0.1 101,472 + -0.5 101,473 - -0.4 101,563 + -0.4 101,641 + -0.1 101,658 + -1.7 101,658 + +0.0 101,658 + -0.3 101,659 - -0.5 101,665 - -0.2 101,770 + -0.0 101,771 - +2.2 101,771 - -0.3 101,878 + EX28DRAFT_2799 0.15 -0.4 101,878 + EX28DRAFT_2799 0.15 -1.2 101,878 + EX28DRAFT_2799 0.15 +1.3 101,879 - EX28DRAFT_2799 0.15 -0.7 101,879 - EX28DRAFT_2799 0.15 -0.2 101,939 - EX28DRAFT_2799 0.19 +0.0 101,939 - EX28DRAFT_2799 0.19 -0.2 101,956 - EX28DRAFT_2799 0.20 -0.6 101,956 - EX28DRAFT_2799 0.20 +0.6 101,960 - EX28DRAFT_2799 0.21 +0.7 101,960 - EX28DRAFT_2799 0.21 -0.6 101,960 - EX28DRAFT_2799 0.21 +0.6 102,121 + EX28DRAFT_2799 0.32 +0.1 102,173 - EX28DRAFT_2799 0.35 +0.8 102,241 + EX28DRAFT_2799 0.40 -0.0 102,371 + EX28DRAFT_2799 0.49 -0.6 102,382 + EX28DRAFT_2799 0.50 +0.7 102,403 + EX28DRAFT_2799 0.51 +2.4 102,540 + EX28DRAFT_2799 0.61 +0.0 102,792 + EX28DRAFT_2799 0.78 -0.1 103,069 - +0.8 103,240 + EX28DRAFT_2800 0.12 -0.1 103,241 - EX28DRAFT_2800 0.12 +0.3 103,253 + EX28DRAFT_2800 0.13 -0.0 103,495 - EX28DRAFT_2800 0.34 +0.1 103,495 - EX28DRAFT_2800 0.34 +0.1 103,596 - EX28DRAFT_2800 0.43 +0.5 103,628 + EX28DRAFT_2800 0.46 +0.2 103,628 + EX28DRAFT_2800 0.46 -0.2 103,628 + EX28DRAFT_2800 0.46 +0.7 103,629 - EX28DRAFT_2800 0.46 +0.2 103,629 - EX28DRAFT_2800 0.46 -0.6 103,629 - EX28DRAFT_2800 0.46 +0.0 103,629 - EX28DRAFT_2800 0.46 +0.5 103,629 - EX28DRAFT_2800 0.46 +0.2 103,658 - EX28DRAFT_2800 0.49 +1.1 103,874 - EX28DRAFT_2800 0.68 +0.3 103,877 + EX28DRAFT_2800 0.68 -1.1 103,877 + EX28DRAFT_2800 0.68 -0.4 104,063 - EX28DRAFT_2800 0.85 -0.2
Or see this region's nucleotide sequence