Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2790 and EX28DRAFT_2791 are separated by 252 nucleotides EX28DRAFT_2791 and EX28DRAFT_2792 overlap by 4 nucleotides EX28DRAFT_2792 and EX28DRAFT_2793 are separated by 12 nucleotides EX28DRAFT_2793 and EX28DRAFT_2794 are separated by 14 nucleotides
EX28DRAFT_2790: EX28DRAFT_2790 - lytic murein transglycosylase B, at 93,698 to 94,798
_2790
EX28DRAFT_2791: EX28DRAFT_2791 - PTS system, glucitol/sorbitol-specific, IIC component, at 95,051 to 95,614
_2791
EX28DRAFT_2792: EX28DRAFT_2792 - PTS system, glucitol/sorbitol-specific, IIBC component, at 95,611 to 96,570
_2792
EX28DRAFT_2793: EX28DRAFT_2793 - Phosphotransferase system sorbitol-specific component IIA, at 96,583 to 96,945
_2793
EX28DRAFT_2794: EX28DRAFT_2794 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 96,960 to 97,739
_2794
Position (kb) 95
96
97 Strain fitness (log2 ratio) -2
-1
0
1
2 at 94.660 kb on + strand, within EX28DRAFT_2790 at 94.660 kb on + strand, within EX28DRAFT_2790 at 94.661 kb on - strand, within EX28DRAFT_2790 at 94.661 kb on - strand, within EX28DRAFT_2790 at 94.738 kb on + strand at 94.739 kb on - strand at 94.741 kb on + strand at 94.741 kb on + strand at 94.742 kb on - strand at 94.833 kb on - strand at 94.835 kb on - strand at 94.835 kb on - strand at 95.334 kb on - strand, within EX28DRAFT_2791 at 95.346 kb on - strand, within EX28DRAFT_2791 at 95.346 kb on - strand, within EX28DRAFT_2791 at 95.363 kb on + strand, within EX28DRAFT_2791 at 95.486 kb on + strand, within EX28DRAFT_2791 at 95.486 kb on + strand, within EX28DRAFT_2791 at 95.487 kb on - strand, within EX28DRAFT_2791 at 95.487 kb on - strand, within EX28DRAFT_2791 at 95.487 kb on - strand, within EX28DRAFT_2791 at 95.696 kb on - strand at 95.696 kb on - strand at 95.845 kb on - strand, within EX28DRAFT_2792 at 95.845 kb on - strand, within EX28DRAFT_2792 at 95.878 kb on - strand, within EX28DRAFT_2792 at 95.932 kb on + strand, within EX28DRAFT_2792 at 95.932 kb on + strand, within EX28DRAFT_2792 at 95.932 kb on + strand, within EX28DRAFT_2792 at 95.933 kb on - strand, within EX28DRAFT_2792 at 95.933 kb on - strand, within EX28DRAFT_2792 at 95.933 kb on - strand, within EX28DRAFT_2792 at 96.011 kb on - strand, within EX28DRAFT_2792 at 96.150 kb on + strand, within EX28DRAFT_2792 at 96.406 kb on - strand, within EX28DRAFT_2792 at 96.558 kb on + strand at 96.568 kb on + strand at 96.595 kb on + strand at 96.943 kb on + strand at 96.943 kb on + strand at 97.000 kb on + strand at 97.000 kb on + strand at 97.218 kb on + strand, within EX28DRAFT_2794 at 97.409 kb on + strand, within EX28DRAFT_2794 at 97.409 kb on + strand, within EX28DRAFT_2794 at 97.409 kb on + strand, within EX28DRAFT_2794 at 97.410 kb on - strand, within EX28DRAFT_2794 at 97.558 kb on - strand, within EX28DRAFT_2794
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 94,660 + EX28DRAFT_2790 0.87 +0.2 94,660 + EX28DRAFT_2790 0.87 +0.4 94,661 - EX28DRAFT_2790 0.87 +1.7 94,661 - EX28DRAFT_2790 0.87 +0.4 94,738 + +0.1 94,739 - +0.1 94,741 + -0.5 94,741 + -0.1 94,742 - +0.2 94,833 - +0.4 94,835 - +0.3 94,835 - +1.4 95,334 - EX28DRAFT_2791 0.50 -0.7 95,346 - EX28DRAFT_2791 0.52 -0.0 95,346 - EX28DRAFT_2791 0.52 -0.4 95,363 + EX28DRAFT_2791 0.55 -0.5 95,486 + EX28DRAFT_2791 0.77 -0.2 95,486 + EX28DRAFT_2791 0.77 -0.9 95,487 - EX28DRAFT_2791 0.77 -0.8 95,487 - EX28DRAFT_2791 0.77 +0.8 95,487 - EX28DRAFT_2791 0.77 +0.0 95,696 - +0.4 95,696 - +1.9 95,845 - EX28DRAFT_2792 0.24 -1.0 95,845 - EX28DRAFT_2792 0.24 +1.2 95,878 - EX28DRAFT_2792 0.28 +1.1 95,932 + EX28DRAFT_2792 0.33 +0.4 95,932 + EX28DRAFT_2792 0.33 +1.3 95,932 + EX28DRAFT_2792 0.33 +2.4 95,933 - EX28DRAFT_2792 0.34 -1.2 95,933 - EX28DRAFT_2792 0.34 +0.5 95,933 - EX28DRAFT_2792 0.34 +0.1 96,011 - EX28DRAFT_2792 0.42 -0.3 96,150 + EX28DRAFT_2792 0.56 -0.1 96,406 - EX28DRAFT_2792 0.83 +0.6 96,558 + -0.4 96,568 + +0.1 96,595 + +1.1 96,943 + -0.1 96,943 + -0.4 97,000 + +0.2 97,000 + +1.1 97,218 + EX28DRAFT_2794 0.33 +0.4 97,409 + EX28DRAFT_2794 0.58 +0.1 97,409 + EX28DRAFT_2794 0.58 -0.2 97,409 + EX28DRAFT_2794 0.58 +1.2 97,410 - EX28DRAFT_2794 0.58 -2.0 97,558 - EX28DRAFT_2794 0.77 +0.5
Or see this region's nucleotide sequence