Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2386

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2385 and EX28DRAFT_2386 are separated by 128 nucleotidesEX28DRAFT_2386 and EX28DRAFT_2387 are separated by 13 nucleotides EX28DRAFT_2385: EX28DRAFT_2385 - choline/carnitine/betaine transport, at 2,409,296 to 2,411,329 _2385 EX28DRAFT_2386: EX28DRAFT_2386 - transcriptional regulator, TetR family, at 2,411,458 to 2,412,045 _2386 EX28DRAFT_2387: EX28DRAFT_2387 - betaine-aldehyde dehydrogenase, at 2,412,059 to 2,413,531 _2387 Position (kb) 2411 2412 2413Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2410.834 kb on - strand, within EX28DRAFT_2385at 2410.837 kb on + strand, within EX28DRAFT_2385at 2410.837 kb on + strand, within EX28DRAFT_2385at 2410.837 kb on + strand, within EX28DRAFT_2385at 2410.838 kb on - strand, within EX28DRAFT_2385at 2410.838 kb on - strand, within EX28DRAFT_2385at 2410.968 kb on + strand, within EX28DRAFT_2385at 2410.969 kb on - strand, within EX28DRAFT_2385at 2410.969 kb on - strand, within EX28DRAFT_2385at 2411.136 kb on + strandat 2411.137 kb on - strandat 2411.157 kb on + strandat 2411.158 kb on - strandat 2411.161 kb on - strandat 2411.272 kb on + strandat 2411.395 kb on - strandat 2411.421 kb on + strandat 2411.522 kb on + strand, within EX28DRAFT_2386at 2411.522 kb on + strand, within EX28DRAFT_2386at 2411.522 kb on + strand, within EX28DRAFT_2386at 2411.602 kb on + strand, within EX28DRAFT_2386at 2411.603 kb on - strand, within EX28DRAFT_2386at 2412.006 kb on + strandat 2412.032 kb on + strandat 2412.059 kb on - strandat 2412.086 kb on + strandat 2412.086 kb on + strandat 2412.087 kb on - strandat 2412.087 kb on - strandat 2412.088 kb on + strandat 2412.088 kb on + strandat 2412.089 kb on - strandat 2412.089 kb on - strandat 2412.089 kb on - strandat 2412.089 kb on - strandat 2412.103 kb on + strandat 2412.103 kb on + strandat 2412.104 kb on - strandat 2412.104 kb on - strandat 2412.104 kb on - strandat 2412.104 kb on - strandat 2412.104 kb on - strandat 2412.402 kb on - strand, within EX28DRAFT_2387at 2412.632 kb on + strand, within EX28DRAFT_2387at 2412.660 kb on + strand, within EX28DRAFT_2387

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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2,410,834 - EX28DRAFT_2385 0.76 -0.0
2,410,837 + EX28DRAFT_2385 0.76 -1.0
2,410,837 + EX28DRAFT_2385 0.76 -1.8
2,410,837 + EX28DRAFT_2385 0.76 -0.4
2,410,838 - EX28DRAFT_2385 0.76 +0.3
2,410,838 - EX28DRAFT_2385 0.76 +0.5
2,410,968 + EX28DRAFT_2385 0.82 -0.3
2,410,969 - EX28DRAFT_2385 0.82 +0.2
2,410,969 - EX28DRAFT_2385 0.82 +0.9
2,411,136 + -0.0
2,411,137 - +0.0
2,411,157 + -0.0
2,411,158 - +1.9
2,411,161 - -0.0
2,411,272 + +0.4
2,411,395 - -0.2
2,411,421 + +0.8
2,411,522 + EX28DRAFT_2386 0.11 +0.1
2,411,522 + EX28DRAFT_2386 0.11 -0.2
2,411,522 + EX28DRAFT_2386 0.11 -0.2
2,411,602 + EX28DRAFT_2386 0.24 -2.3
2,411,603 - EX28DRAFT_2386 0.25 -0.3
2,412,006 + +4.1
2,412,032 + +0.1
2,412,059 - -0.3
2,412,086 + -1.5
2,412,086 + -0.3
2,412,087 - -0.1
2,412,087 - -1.2
2,412,088 + -0.1
2,412,088 + -0.1
2,412,089 - -0.5
2,412,089 - +0.2
2,412,089 - +0.6
2,412,089 - -0.3
2,412,103 + +0.5
2,412,103 + -0.0
2,412,104 - -0.4
2,412,104 - -0.6
2,412,104 - +0.3
2,412,104 - +0.8
2,412,104 - -0.6
2,412,402 - EX28DRAFT_2387 0.23 +0.6
2,412,632 + EX28DRAFT_2387 0.39 +0.2
2,412,660 + EX28DRAFT_2387 0.41 -0.5

Or see this region's nucleotide sequence