Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1914

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1912 and EX28DRAFT_1913 overlap by 4 nucleotidesEX28DRAFT_1913 and EX28DRAFT_1914 are separated by 245 nucleotidesEX28DRAFT_1914 and EX28DRAFT_1915 overlap by 1 nucleotidesEX28DRAFT_1915 and EX28DRAFT_1916 are separated by 11 nucleotides EX28DRAFT_1912: EX28DRAFT_1912 - Uncharacterized protein conserved in bacteria, at 1,924,225 to 1,924,584 _1912 EX28DRAFT_1913: EX28DRAFT_1913 - transcriptional regulator, TetR family, at 1,924,581 to 1,925,219 _1913 EX28DRAFT_1914: EX28DRAFT_1914 - pyrimidine utilization protein A, at 1,925,465 to 1,926,556 _1914 EX28DRAFT_1915: EX28DRAFT_1915 - pyrimidine utilization protein B, at 1,926,556 to 1,927,245 _1915 EX28DRAFT_1916: EX28DRAFT_1916 - pyrimidine utilization protein C, at 1,927,257 to 1,927,643 _1916 Position (kb) 1925 1926 1927Strain fitness (log2 ratio) -1 0 1 2 3at 1924.556 kb on + strandat 1924.664 kb on + strand, within EX28DRAFT_1913at 1924.665 kb on - strand, within EX28DRAFT_1913at 1924.703 kb on - strand, within EX28DRAFT_1913at 1924.931 kb on - strand, within EX28DRAFT_1913at 1925.023 kb on + strand, within EX28DRAFT_1913at 1925.023 kb on + strand, within EX28DRAFT_1913at 1925.024 kb on - strand, within EX28DRAFT_1913at 1925.045 kb on - strand, within EX28DRAFT_1913at 1925.047 kb on + strand, within EX28DRAFT_1913at 1925.189 kb on + strandat 1925.384 kb on - strandat 1925.446 kb on + strandat 1925.446 kb on + strandat 1925.447 kb on - strandat 1925.478 kb on + strandat 1925.479 kb on - strandat 1925.531 kb on + strandat 1925.532 kb on - strandat 1925.554 kb on + strandat 1925.714 kb on + strand, within EX28DRAFT_1914at 1925.715 kb on - strand, within EX28DRAFT_1914at 1925.837 kb on + strand, within EX28DRAFT_1914at 1925.904 kb on - strand, within EX28DRAFT_1914at 1925.904 kb on - strand, within EX28DRAFT_1914at 1926.176 kb on + strand, within EX28DRAFT_1914at 1926.176 kb on + strand, within EX28DRAFT_1914at 1926.239 kb on + strand, within EX28DRAFT_1914at 1926.386 kb on + strand, within EX28DRAFT_1914at 1927.090 kb on + strand, within EX28DRAFT_1915at 1927.341 kb on + strand, within EX28DRAFT_1916at 1927.341 kb on + strand, within EX28DRAFT_1916at 1927.342 kb on - strand, within EX28DRAFT_1916at 1927.342 kb on - strand, within EX28DRAFT_1916at 1927.389 kb on - strand, within EX28DRAFT_1916at 1927.512 kb on + strand, within EX28DRAFT_1916at 1927.533 kb on + strand, within EX28DRAFT_1916at 1927.533 kb on + strand, within EX28DRAFT_1916

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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1,924,556 + +0.1
1,924,664 + EX28DRAFT_1913 0.13 -1.1
1,924,665 - EX28DRAFT_1913 0.13 +0.7
1,924,703 - EX28DRAFT_1913 0.19 +0.9
1,924,931 - EX28DRAFT_1913 0.55 -1.0
1,925,023 + EX28DRAFT_1913 0.69 +0.1
1,925,023 + EX28DRAFT_1913 0.69 -0.1
1,925,024 - EX28DRAFT_1913 0.69 -1.1
1,925,045 - EX28DRAFT_1913 0.73 -0.8
1,925,047 + EX28DRAFT_1913 0.73 -0.2
1,925,189 + -0.7
1,925,384 - -0.3
1,925,446 + -0.2
1,925,446 + -0.3
1,925,447 - -0.1
1,925,478 + -1.7
1,925,479 - +3.3
1,925,531 + -1.1
1,925,532 - +0.1
1,925,554 + -0.4
1,925,714 + EX28DRAFT_1914 0.23 +0.1
1,925,715 - EX28DRAFT_1914 0.23 +1.6
1,925,837 + EX28DRAFT_1914 0.34 -0.3
1,925,904 - EX28DRAFT_1914 0.40 +0.3
1,925,904 - EX28DRAFT_1914 0.40 +3.0
1,926,176 + EX28DRAFT_1914 0.65 -0.7
1,926,176 + EX28DRAFT_1914 0.65 +0.1
1,926,239 + EX28DRAFT_1914 0.71 +0.2
1,926,386 + EX28DRAFT_1914 0.84 +0.2
1,927,090 + EX28DRAFT_1915 0.77 -0.4
1,927,341 + EX28DRAFT_1916 0.22 +0.6
1,927,341 + EX28DRAFT_1916 0.22 +0.3
1,927,342 - EX28DRAFT_1916 0.22 -0.5
1,927,342 - EX28DRAFT_1916 0.22 -0.4
1,927,389 - EX28DRAFT_1916 0.34 -0.5
1,927,512 + EX28DRAFT_1916 0.66 +0.2
1,927,533 + EX28DRAFT_1916 0.71 +0.0
1,927,533 + EX28DRAFT_1916 0.71 +0.9

Or see this region's nucleotide sequence