Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1753 and EX28DRAFT_1754 are separated by 6 nucleotides EX28DRAFT_1754 and EX28DRAFT_1755 are separated by 6 nucleotides EX28DRAFT_1755 and EX28DRAFT_1756 overlap by 28 nucleotides
EX28DRAFT_1753: EX28DRAFT_1753 - exodeoxyribonuclease III, at 1,768,728 to 1,769,534
_1753
EX28DRAFT_1754: EX28DRAFT_1754 - Uncharacterized conserved protein, at 1,769,541 to 1,770,224
_1754
EX28DRAFT_1755: EX28DRAFT_1755 - ABC-type uncharacterized transport system, periplasmic component, at 1,770,231 to 1,771,400
_1755
EX28DRAFT_1756: EX28DRAFT_1756 - ABC-type uncharacterized transport system, permease component, at 1,771,373 to 1,772,902
_1756
Position (kb) 1770
1771
1772 Strain fitness (log2 ratio) -1
0
1
2 at 1769.319 kb on - strand, within EX28DRAFT_1753 at 1769.533 kb on - strand at 1769.533 kb on - strand at 1769.564 kb on - strand at 1769.588 kb on + strand at 1769.588 kb on + strand at 1769.639 kb on + strand, within EX28DRAFT_1754 at 1769.640 kb on - strand, within EX28DRAFT_1754 at 1769.668 kb on - strand, within EX28DRAFT_1754 at 1769.715 kb on + strand, within EX28DRAFT_1754 at 1769.716 kb on - strand, within EX28DRAFT_1754 at 1769.716 kb on - strand, within EX28DRAFT_1754 at 1769.716 kb on - strand, within EX28DRAFT_1754 at 1770.022 kb on + strand, within EX28DRAFT_1754 at 1770.023 kb on - strand, within EX28DRAFT_1754 at 1770.023 kb on - strand, within EX28DRAFT_1754 at 1770.023 kb on - strand, within EX28DRAFT_1754 at 1770.024 kb on + strand, within EX28DRAFT_1754 at 1770.143 kb on - strand, within EX28DRAFT_1754 at 1770.152 kb on + strand, within EX28DRAFT_1754 at 1770.158 kb on - strand at 1770.158 kb on - strand at 1770.215 kb on + strand at 1770.230 kb on + strand at 1770.500 kb on + strand, within EX28DRAFT_1755 at 1770.810 kb on - strand, within EX28DRAFT_1755 at 1771.089 kb on + strand, within EX28DRAFT_1755 at 1771.090 kb on - strand, within EX28DRAFT_1755 at 1771.090 kb on - strand, within EX28DRAFT_1755 at 1771.433 kb on + strand at 1772.111 kb on - strand, within EX28DRAFT_1756
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 1,769,319 - EX28DRAFT_1753 0.73 +0.8 1,769,533 - +0.1 1,769,533 - -0.9 1,769,564 - +0.5 1,769,588 + +0.6 1,769,588 + +1.3 1,769,639 + EX28DRAFT_1754 0.14 +0.9 1,769,640 - EX28DRAFT_1754 0.14 -0.2 1,769,668 - EX28DRAFT_1754 0.19 -0.1 1,769,715 + EX28DRAFT_1754 0.25 +1.9 1,769,716 - EX28DRAFT_1754 0.26 +0.1 1,769,716 - EX28DRAFT_1754 0.26 +0.2 1,769,716 - EX28DRAFT_1754 0.26 +0.3 1,770,022 + EX28DRAFT_1754 0.70 +0.6 1,770,023 - EX28DRAFT_1754 0.70 +0.1 1,770,023 - EX28DRAFT_1754 0.70 +0.6 1,770,023 - EX28DRAFT_1754 0.70 +0.4 1,770,024 + EX28DRAFT_1754 0.71 -1.2 1,770,143 - EX28DRAFT_1754 0.88 +0.3 1,770,152 + EX28DRAFT_1754 0.89 +0.3 1,770,158 - +0.2 1,770,158 - +0.1 1,770,215 + +1.0 1,770,230 + +0.2 1,770,500 + EX28DRAFT_1755 0.23 -0.1 1,770,810 - EX28DRAFT_1755 0.49 -0.7 1,771,089 + EX28DRAFT_1755 0.73 -1.0 1,771,090 - EX28DRAFT_1755 0.73 +0.2 1,771,090 - EX28DRAFT_1755 0.73 -1.1 1,771,433 + +0.9 1,772,111 - EX28DRAFT_1756 0.48 +0.4
Or see this region's nucleotide sequence