Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1511

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1508 and EX28DRAFT_1509 overlap by 14 nucleotidesEX28DRAFT_1509 and EX28DRAFT_1510 are separated by 118 nucleotidesEX28DRAFT_1510 and EX28DRAFT_1511 are separated by 133 nucleotidesEX28DRAFT_1511 and EX28DRAFT_1512 are separated by 3 nucleotidesEX28DRAFT_1512 and EX28DRAFT_1513 are separated by 28 nucleotides EX28DRAFT_1508: EX28DRAFT_1508 - Membrane transporters of cations and cationic drugs, at 1,523,877 to 1,524,206 _1508 EX28DRAFT_1509: EX28DRAFT_1509 - Membrane transporters of cations and cationic drugs, at 1,524,193 to 1,524,555 _1509 EX28DRAFT_1510: EX28DRAFT_1510 - hypothetical protein, at 1,524,674 to 1,524,844 _1510 EX28DRAFT_1511: EX28DRAFT_1511 - Predicted permease, at 1,524,978 to 1,526,012 _1511 EX28DRAFT_1512: EX28DRAFT_1512 - NADPH:quinone reductase and related Zn-dependent oxidoreductases, at 1,526,016 to 1,526,963 _1512 EX28DRAFT_1513: EX28DRAFT_1513 - Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases, at 1,526,992 to 1,528,017 _1513 Position (kb) 1524 1525 1526 1527Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1524.025 kb on - strand, within EX28DRAFT_1508at 1524.539 kb on - strandat 1524.539 kb on - strandat 1524.676 kb on - strandat 1524.677 kb on + strandat 1524.678 kb on - strandat 1524.730 kb on - strand, within EX28DRAFT_1510at 1524.732 kb on - strand, within EX28DRAFT_1510at 1524.753 kb on + strand, within EX28DRAFT_1510at 1524.767 kb on - strand, within EX28DRAFT_1510at 1525.046 kb on - strandat 1525.077 kb on - strandat 1525.088 kb on + strand, within EX28DRAFT_1511at 1525.119 kb on - strand, within EX28DRAFT_1511at 1525.266 kb on + strand, within EX28DRAFT_1511at 1525.266 kb on + strand, within EX28DRAFT_1511at 1525.356 kb on + strand, within EX28DRAFT_1511at 1525.357 kb on - strand, within EX28DRAFT_1511at 1525.359 kb on - strand, within EX28DRAFT_1511at 1525.680 kb on + strand, within EX28DRAFT_1511at 1525.680 kb on + strand, within EX28DRAFT_1511at 1525.680 kb on + strand, within EX28DRAFT_1511at 1525.680 kb on + strand, within EX28DRAFT_1511at 1525.680 kb on + strand, within EX28DRAFT_1511at 1525.681 kb on - strand, within EX28DRAFT_1511at 1525.681 kb on - strand, within EX28DRAFT_1511at 1525.681 kb on - strand, within EX28DRAFT_1511at 1525.682 kb on + strand, within EX28DRAFT_1511at 1525.753 kb on - strand, within EX28DRAFT_1511at 1526.007 kb on - strandat 1526.011 kb on - strandat 1526.066 kb on - strandat 1526.069 kb on + strandat 1526.119 kb on + strand, within EX28DRAFT_1512at 1526.138 kb on + strand, within EX28DRAFT_1512at 1526.342 kb on - strand, within EX28DRAFT_1512at 1526.595 kb on - strand, within EX28DRAFT_1512at 1526.596 kb on + strand, within EX28DRAFT_1512at 1526.596 kb on + strand, within EX28DRAFT_1512at 1526.596 kb on + strand, within EX28DRAFT_1512at 1526.597 kb on - strand, within EX28DRAFT_1512at 1526.597 kb on - strand, within EX28DRAFT_1512at 1526.597 kb on - strand, within EX28DRAFT_1512at 1526.597 kb on - strand, within EX28DRAFT_1512at 1526.597 kb on - strand, within EX28DRAFT_1512at 1526.597 kb on - strand, within EX28DRAFT_1512at 1526.647 kb on + strand, within EX28DRAFT_1512at 1526.647 kb on + strand, within EX28DRAFT_1512at 1526.648 kb on - strand, within EX28DRAFT_1512at 1526.648 kb on - strand, within EX28DRAFT_1512at 1526.668 kb on + strand, within EX28DRAFT_1512

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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1,524,025 - EX28DRAFT_1508 0.45 -0.3
1,524,539 - +0.2
1,524,539 - -1.7
1,524,676 - +0.3
1,524,677 + -0.3
1,524,678 - +0.4
1,524,730 - EX28DRAFT_1510 0.33 -0.3
1,524,732 - EX28DRAFT_1510 0.34 -1.8
1,524,753 + EX28DRAFT_1510 0.46 -3.0
1,524,767 - EX28DRAFT_1510 0.54 -1.0
1,525,046 - +1.3
1,525,077 - -0.6
1,525,088 + EX28DRAFT_1511 0.11 -0.9
1,525,119 - EX28DRAFT_1511 0.14 +0.6
1,525,266 + EX28DRAFT_1511 0.28 +0.6
1,525,266 + EX28DRAFT_1511 0.28 +0.5
1,525,356 + EX28DRAFT_1511 0.37 -0.2
1,525,357 - EX28DRAFT_1511 0.37 +0.1
1,525,359 - EX28DRAFT_1511 0.37 +0.8
1,525,680 + EX28DRAFT_1511 0.68 +0.2
1,525,680 + EX28DRAFT_1511 0.68 -1.0
1,525,680 + EX28DRAFT_1511 0.68 +1.2
1,525,680 + EX28DRAFT_1511 0.68 +1.7
1,525,680 + EX28DRAFT_1511 0.68 -0.1
1,525,681 - EX28DRAFT_1511 0.68 +0.8
1,525,681 - EX28DRAFT_1511 0.68 +2.9
1,525,681 - EX28DRAFT_1511 0.68 +0.7
1,525,682 + EX28DRAFT_1511 0.68 -0.5
1,525,753 - EX28DRAFT_1511 0.75 -0.4
1,526,007 - -1.1
1,526,011 - -0.6
1,526,066 - +0.7
1,526,069 + +0.0
1,526,119 + EX28DRAFT_1512 0.11 +0.9
1,526,138 + EX28DRAFT_1512 0.13 +0.5
1,526,342 - EX28DRAFT_1512 0.34 +0.5
1,526,595 - EX28DRAFT_1512 0.61 +0.5
1,526,596 + EX28DRAFT_1512 0.61 +0.2
1,526,596 + EX28DRAFT_1512 0.61 +0.2
1,526,596 + EX28DRAFT_1512 0.61 +0.4
1,526,597 - EX28DRAFT_1512 0.61 -0.8
1,526,597 - EX28DRAFT_1512 0.61 +0.6
1,526,597 - EX28DRAFT_1512 0.61 +0.5
1,526,597 - EX28DRAFT_1512 0.61 -0.5
1,526,597 - EX28DRAFT_1512 0.61 +1.6
1,526,597 - EX28DRAFT_1512 0.61 +1.2
1,526,647 + EX28DRAFT_1512 0.67 -0.2
1,526,647 + EX28DRAFT_1512 0.67 -0.4
1,526,648 - EX28DRAFT_1512 0.67 +0.0
1,526,648 - EX28DRAFT_1512 0.67 +0.8
1,526,668 + EX28DRAFT_1512 0.69 +3.4

Or see this region's nucleotide sequence