Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0875

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0873 and EX28DRAFT_0874 are separated by 31 nucleotidesEX28DRAFT_0874 and EX28DRAFT_0875 are separated by 33 nucleotidesEX28DRAFT_0875 and EX28DRAFT_0876 are separated by 144 nucleotidesEX28DRAFT_0876 and EX28DRAFT_0877 are separated by 109 nucleotides EX28DRAFT_0873: EX28DRAFT_0873 - Kef-type K+ transport systems, predicted NAD-binding component, at 886,398 to 887,267 _0873 EX28DRAFT_0874: EX28DRAFT_0874 - Uncharacterized protein conserved in bacteria, at 887,299 to 887,628 _0874 EX28DRAFT_0875: EX28DRAFT_0875 - cardiolipin synthase, at 887,662 to 889,122 _0875 EX28DRAFT_0876: EX28DRAFT_0876 - hypothetical protein, at 889,267 to 889,440 _0876 EX28DRAFT_0877: EX28DRAFT_0877 - Putative threonine efflux protein, at 889,550 to 890,185 _0877 Position (kb) 887 888 889 890Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 886.675 kb on + strand, within EX28DRAFT_0873at 886.675 kb on + strand, within EX28DRAFT_0873at 886.698 kb on + strand, within EX28DRAFT_0873at 886.749 kb on + strand, within EX28DRAFT_0873at 886.749 kb on + strand, within EX28DRAFT_0873at 886.750 kb on - strand, within EX28DRAFT_0873at 886.750 kb on - strand, within EX28DRAFT_0873at 886.750 kb on - strand, within EX28DRAFT_0873at 886.785 kb on + strand, within EX28DRAFT_0873at 886.785 kb on + strand, within EX28DRAFT_0873at 886.785 kb on + strand, within EX28DRAFT_0873at 886.785 kb on + strand, within EX28DRAFT_0873at 886.786 kb on - strand, within EX28DRAFT_0873at 886.825 kb on + strand, within EX28DRAFT_0873at 886.825 kb on + strand, within EX28DRAFT_0873at 886.830 kb on - strand, within EX28DRAFT_0873at 886.830 kb on - strand, within EX28DRAFT_0873at 886.862 kb on - strand, within EX28DRAFT_0873at 886.923 kb on - strand, within EX28DRAFT_0873at 886.959 kb on + strand, within EX28DRAFT_0873at 886.960 kb on - strand, within EX28DRAFT_0873at 886.964 kb on - strand, within EX28DRAFT_0873at 886.964 kb on - strand, within EX28DRAFT_0873at 886.966 kb on + strand, within EX28DRAFT_0873at 886.967 kb on - strand, within EX28DRAFT_0873at 886.967 kb on - strand, within EX28DRAFT_0873at 887.064 kb on - strand, within EX28DRAFT_0873at 887.139 kb on - strand, within EX28DRAFT_0873at 887.139 kb on - strand, within EX28DRAFT_0873at 887.368 kb on - strand, within EX28DRAFT_0874at 887.515 kb on - strand, within EX28DRAFT_0874at 887.574 kb on - strand, within EX28DRAFT_0874at 887.643 kb on + strandat 887.763 kb on + strandat 887.764 kb on - strandat 887.765 kb on + strandat 887.765 kb on + strandat 887.765 kb on + strandat 887.765 kb on + strandat 887.765 kb on + strandat 887.766 kb on - strandat 887.766 kb on - strandat 887.766 kb on - strandat 887.766 kb on - strandat 888.096 kb on - strand, within EX28DRAFT_0875at 888.096 kb on - strand, within EX28DRAFT_0875at 888.131 kb on + strand, within EX28DRAFT_0875at 888.160 kb on + strand, within EX28DRAFT_0875at 888.195 kb on + strand, within EX28DRAFT_0875at 888.195 kb on + strand, within EX28DRAFT_0875at 888.205 kb on - strand, within EX28DRAFT_0875at 888.231 kb on + strand, within EX28DRAFT_0875at 888.231 kb on + strand, within EX28DRAFT_0875at 888.231 kb on + strand, within EX28DRAFT_0875at 888.235 kb on - strand, within EX28DRAFT_0875at 888.235 kb on - strand, within EX28DRAFT_0875at 888.362 kb on - strand, within EX28DRAFT_0875at 888.425 kb on + strand, within EX28DRAFT_0875at 888.425 kb on + strand, within EX28DRAFT_0875at 888.425 kb on + strand, within EX28DRAFT_0875at 888.425 kb on + strand, within EX28DRAFT_0875at 888.426 kb on - strand, within EX28DRAFT_0875at 888.426 kb on - strand, within EX28DRAFT_0875at 888.426 kb on - strand, within EX28DRAFT_0875at 888.426 kb on - strand, within EX28DRAFT_0875at 888.574 kb on - strand, within EX28DRAFT_0875at 888.675 kb on - strand, within EX28DRAFT_0875at 888.690 kb on + strand, within EX28DRAFT_0875at 888.693 kb on + strand, within EX28DRAFT_0875at 888.852 kb on + strand, within EX28DRAFT_0875at 888.987 kb on + strandat 888.990 kb on - strandat 889.048 kb on + strandat 889.110 kb on - strandat 889.163 kb on - strandat 889.163 kb on - strandat 889.231 kb on + strandat 889.232 kb on - strandat 889.253 kb on - strandat 889.253 kb on - strandat 889.262 kb on + strandat 889.262 kb on + strandat 889.278 kb on + strandat 889.368 kb on + strand, within EX28DRAFT_0876at 889.435 kb on - strandat 889.477 kb on + strandat 889.478 kb on - strandat 889.505 kb on + strandat 889.505 kb on + strandat 889.506 kb on - strandat 889.518 kb on - strandat 889.532 kb on + strandat 889.586 kb on + strandat 889.586 kb on + strandat 889.586 kb on + strandat 889.586 kb on + strandat 889.586 kb on + strandat 889.586 kb on + strandat 889.587 kb on - strandat 889.587 kb on - strandat 889.587 kb on - strandat 889.587 kb on - strandat 889.587 kb on - strandat 889.587 kb on - strandat 889.679 kb on + strand, within EX28DRAFT_0877at 889.680 kb on - strand, within EX28DRAFT_0877at 889.698 kb on + strand, within EX28DRAFT_0877at 889.777 kb on + strand, within EX28DRAFT_0877at 889.777 kb on + strand, within EX28DRAFT_0877at 889.777 kb on + strand, within EX28DRAFT_0877at 889.805 kb on + strand, within EX28DRAFT_0877at 889.805 kb on + strand, within EX28DRAFT_0877at 889.806 kb on - strand, within EX28DRAFT_0877at 889.806 kb on - strand, within EX28DRAFT_0877at 889.892 kb on - strand, within EX28DRAFT_0877at 889.917 kb on + strand, within EX28DRAFT_0877at 889.949 kb on + strand, within EX28DRAFT_0877at 889.950 kb on - strand, within EX28DRAFT_0877at 889.950 kb on - strand, within EX28DRAFT_0877at 889.950 kb on - strand, within EX28DRAFT_0877at 889.953 kb on + strand, within EX28DRAFT_0877at 889.954 kb on - strand, within EX28DRAFT_0877at 890.035 kb on - strand, within EX28DRAFT_0877at 890.035 kb on - strand, within EX28DRAFT_0877at 890.037 kb on + strand, within EX28DRAFT_0877at 890.038 kb on - strand, within EX28DRAFT_0877at 890.044 kb on + strand, within EX28DRAFT_0877at 890.044 kb on + strand, within EX28DRAFT_0877at 890.044 kb on + strand, within EX28DRAFT_0877at 890.045 kb on - strand, within EX28DRAFT_0877at 890.048 kb on + strand, within EX28DRAFT_0877at 890.048 kb on + strand, within EX28DRAFT_0877at 890.048 kb on + strand, within EX28DRAFT_0877at 890.048 kb on + strand, within EX28DRAFT_0877at 890.048 kb on + strand, within EX28DRAFT_0877at 890.049 kb on - strand, within EX28DRAFT_0877at 890.049 kb on - strand, within EX28DRAFT_0877at 890.049 kb on - strand, within EX28DRAFT_0877at 890.049 kb on - strand, within EX28DRAFT_0877at 890.049 kb on - strand, within EX28DRAFT_0877

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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886,675 + EX28DRAFT_0873 0.32 -0.5
886,675 + EX28DRAFT_0873 0.32 +0.1
886,698 + EX28DRAFT_0873 0.34 +0.3
886,749 + EX28DRAFT_0873 0.40 +0.7
886,749 + EX28DRAFT_0873 0.40 -0.7
886,750 - EX28DRAFT_0873 0.40 +0.3
886,750 - EX28DRAFT_0873 0.40 +0.5
886,750 - EX28DRAFT_0873 0.40 +0.1
886,785 + EX28DRAFT_0873 0.44 -0.6
886,785 + EX28DRAFT_0873 0.44 -0.2
886,785 + EX28DRAFT_0873 0.44 -0.5
886,785 + EX28DRAFT_0873 0.44 +0.7
886,786 - EX28DRAFT_0873 0.45 +0.0
886,825 + EX28DRAFT_0873 0.49 +1.7
886,825 + EX28DRAFT_0873 0.49 -0.5
886,830 - EX28DRAFT_0873 0.50 +1.1
886,830 - EX28DRAFT_0873 0.50 -0.3
886,862 - EX28DRAFT_0873 0.53 -0.0
886,923 - EX28DRAFT_0873 0.60 -1.9
886,959 + EX28DRAFT_0873 0.64 +0.6
886,960 - EX28DRAFT_0873 0.65 -0.6
886,964 - EX28DRAFT_0873 0.65 -0.5
886,964 - EX28DRAFT_0873 0.65 +0.2
886,966 + EX28DRAFT_0873 0.65 -0.1
886,967 - EX28DRAFT_0873 0.65 +4.3
886,967 - EX28DRAFT_0873 0.65 -0.7
887,064 - EX28DRAFT_0873 0.77 +0.6
887,139 - EX28DRAFT_0873 0.85 +0.3
887,139 - EX28DRAFT_0873 0.85 +0.3
887,368 - EX28DRAFT_0874 0.21 -0.4
887,515 - EX28DRAFT_0874 0.65 -0.6
887,574 - EX28DRAFT_0874 0.83 +1.1
887,643 + +0.0
887,763 + -0.5
887,764 - +0.4
887,765 + -0.4
887,765 + +1.6
887,765 + -1.7
887,765 + +1.8
887,765 + +0.4
887,766 - -0.2
887,766 - +0.1
887,766 - +0.1
887,766 - -1.0
888,096 - EX28DRAFT_0875 0.30 -0.7
888,096 - EX28DRAFT_0875 0.30 +0.6
888,131 + EX28DRAFT_0875 0.32 -0.4
888,160 + EX28DRAFT_0875 0.34 -0.2
888,195 + EX28DRAFT_0875 0.36 -0.9
888,195 + EX28DRAFT_0875 0.36 -0.6
888,205 - EX28DRAFT_0875 0.37 -0.9
888,231 + EX28DRAFT_0875 0.39 +3.4
888,231 + EX28DRAFT_0875 0.39 +0.4
888,231 + EX28DRAFT_0875 0.39 -1.0
888,235 - EX28DRAFT_0875 0.39 -1.1
888,235 - EX28DRAFT_0875 0.39 -0.3
888,362 - EX28DRAFT_0875 0.48 +0.3
888,425 + EX28DRAFT_0875 0.52 +2.6
888,425 + EX28DRAFT_0875 0.52 +0.3
888,425 + EX28DRAFT_0875 0.52 -1.1
888,425 + EX28DRAFT_0875 0.52 +0.1
888,426 - EX28DRAFT_0875 0.52 -0.6
888,426 - EX28DRAFT_0875 0.52 +0.3
888,426 - EX28DRAFT_0875 0.52 -0.8
888,426 - EX28DRAFT_0875 0.52 -0.1
888,574 - EX28DRAFT_0875 0.62 +0.2
888,675 - EX28DRAFT_0875 0.69 -0.0
888,690 + EX28DRAFT_0875 0.70 -0.7
888,693 + EX28DRAFT_0875 0.71 -0.2
888,852 + EX28DRAFT_0875 0.81 +3.6
888,987 + -0.2
888,990 - +1.5
889,048 + -0.8
889,110 - -0.6
889,163 - -0.6
889,163 - +0.5
889,231 + +0.9
889,232 - +0.1
889,253 - -0.7
889,253 - -0.1
889,262 + +0.3
889,262 + +1.3
889,278 + +0.3
889,368 + EX28DRAFT_0876 0.58 +0.3
889,435 - +0.4
889,477 + +0.5
889,478 - +0.2
889,505 + +0.5
889,505 + +0.1
889,506 - -1.0
889,518 - +0.3
889,532 + +0.8
889,586 + -1.9
889,586 + -0.0
889,586 + -0.3
889,586 + -0.1
889,586 + +2.4
889,586 + +0.6
889,587 - +0.6
889,587 - -0.1
889,587 - -0.5
889,587 - +0.3
889,587 - -0.4
889,587 - -0.8
889,679 + EX28DRAFT_0877 0.20 +2.9
889,680 - EX28DRAFT_0877 0.20 -0.3
889,698 + EX28DRAFT_0877 0.23 -1.4
889,777 + EX28DRAFT_0877 0.36 +0.4
889,777 + EX28DRAFT_0877 0.36 -0.1
889,777 + EX28DRAFT_0877 0.36 -0.0
889,805 + EX28DRAFT_0877 0.40 -0.1
889,805 + EX28DRAFT_0877 0.40 -1.8
889,806 - EX28DRAFT_0877 0.40 -0.5
889,806 - EX28DRAFT_0877 0.40 +0.8
889,892 - EX28DRAFT_0877 0.54 -0.1
889,917 + EX28DRAFT_0877 0.58 +1.2
889,949 + EX28DRAFT_0877 0.63 +0.9
889,950 - EX28DRAFT_0877 0.63 +0.4
889,950 - EX28DRAFT_0877 0.63 +0.0
889,950 - EX28DRAFT_0877 0.63 -3.0
889,953 + EX28DRAFT_0877 0.63 +0.3
889,954 - EX28DRAFT_0877 0.64 +0.1
890,035 - EX28DRAFT_0877 0.76 -0.9
890,035 - EX28DRAFT_0877 0.76 +0.3
890,037 + EX28DRAFT_0877 0.77 +0.2
890,038 - EX28DRAFT_0877 0.77 -0.5
890,044 + EX28DRAFT_0877 0.78 -1.5
890,044 + EX28DRAFT_0877 0.78 +0.5
890,044 + EX28DRAFT_0877 0.78 +0.3
890,045 - EX28DRAFT_0877 0.78 +0.8
890,048 + EX28DRAFT_0877 0.78 +0.3
890,048 + EX28DRAFT_0877 0.78 -0.2
890,048 + EX28DRAFT_0877 0.78 +0.6
890,048 + EX28DRAFT_0877 0.78 +1.5
890,048 + EX28DRAFT_0877 0.78 +1.1
890,049 - EX28DRAFT_0877 0.78 -0.7
890,049 - EX28DRAFT_0877 0.78 +0.4
890,049 - EX28DRAFT_0877 0.78 -0.4
890,049 - EX28DRAFT_0877 0.78 -0.8
890,049 - EX28DRAFT_0877 0.78 -2.0

Or see this region's nucleotide sequence