Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0807

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0806 and EX28DRAFT_0807 are separated by 34 nucleotidesEX28DRAFT_0807 and EX28DRAFT_0808 are separated by 24 nucleotides EX28DRAFT_0806: EX28DRAFT_0806 - type VI secretion protein, VC_A0111 family, at 806,408 to 807,451 _0806 EX28DRAFT_0807: EX28DRAFT_0807 - type VI secretion ATPase, ClpV1 family, at 807,486 to 810,101 _0807 EX28DRAFT_0808: EX28DRAFT_0808 - Serine/threonine protein kinase, at 810,126 to 811,544 _0808 Position (kb) 807 808 809 810 811Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 806.683 kb on + strand, within EX28DRAFT_0806at 806.684 kb on - strand, within EX28DRAFT_0806at 806.759 kb on + strand, within EX28DRAFT_0806at 806.759 kb on + strand, within EX28DRAFT_0806at 806.760 kb on - strand, within EX28DRAFT_0806at 806.828 kb on + strand, within EX28DRAFT_0806at 807.039 kb on - strand, within EX28DRAFT_0806at 807.044 kb on - strand, within EX28DRAFT_0806at 807.227 kb on + strand, within EX28DRAFT_0806at 807.228 kb on - strand, within EX28DRAFT_0806at 807.228 kb on - strand, within EX28DRAFT_0806at 807.376 kb on - strandat 807.380 kb on + strandat 807.434 kb on + strandat 807.449 kb on + strandat 807.459 kb on - strandat 807.497 kb on + strandat 807.535 kb on + strandat 807.535 kb on + strandat 807.536 kb on - strandat 807.539 kb on + strandat 807.539 kb on + strandat 807.588 kb on + strandat 807.588 kb on + strandat 807.589 kb on - strandat 807.759 kb on - strand, within EX28DRAFT_0807at 808.373 kb on + strand, within EX28DRAFT_0807at 808.683 kb on + strand, within EX28DRAFT_0807at 808.684 kb on - strand, within EX28DRAFT_0807at 808.684 kb on - strand, within EX28DRAFT_0807at 808.684 kb on - strand, within EX28DRAFT_0807at 808.903 kb on - strand, within EX28DRAFT_0807at 809.306 kb on + strand, within EX28DRAFT_0807at 809.307 kb on - strand, within EX28DRAFT_0807at 809.464 kb on + strand, within EX28DRAFT_0807at 809.464 kb on + strand, within EX28DRAFT_0807at 809.465 kb on - strand, within EX28DRAFT_0807at 809.465 kb on - strand, within EX28DRAFT_0807at 809.465 kb on - strand, within EX28DRAFT_0807at 809.645 kb on + strand, within EX28DRAFT_0807at 809.799 kb on + strand, within EX28DRAFT_0807at 809.800 kb on - strand, within EX28DRAFT_0807at 809.888 kb on + strandat 809.889 kb on - strandat 810.014 kb on - strandat 810.014 kb on - strandat 810.102 kb on + strandat 810.121 kb on - strandat 810.140 kb on + strandat 810.287 kb on + strand, within EX28DRAFT_0808at 810.469 kb on - strand, within EX28DRAFT_0808at 810.469 kb on - strand, within EX28DRAFT_0808at 810.469 kb on - strand, within EX28DRAFT_0808at 810.469 kb on - strand, within EX28DRAFT_0808at 810.486 kb on + strand, within EX28DRAFT_0808at 810.606 kb on + strand, within EX28DRAFT_0808at 810.759 kb on + strand, within EX28DRAFT_0808at 810.805 kb on - strand, within EX28DRAFT_0808at 810.919 kb on - strand, within EX28DRAFT_0808at 811.009 kb on + strand, within EX28DRAFT_0808at 811.009 kb on + strand, within EX28DRAFT_0808at 811.009 kb on + strand, within EX28DRAFT_0808at 811.009 kb on + strand, within EX28DRAFT_0808at 811.010 kb on - strand, within EX28DRAFT_0808at 811.010 kb on - strand, within EX28DRAFT_0808

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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806,683 + EX28DRAFT_0806 0.26 -0.5
806,684 - EX28DRAFT_0806 0.26 +3.4
806,759 + EX28DRAFT_0806 0.34 +0.0
806,759 + EX28DRAFT_0806 0.34 -0.5
806,760 - EX28DRAFT_0806 0.34 +0.4
806,828 + EX28DRAFT_0806 0.40 -1.5
807,039 - EX28DRAFT_0806 0.60 -0.2
807,044 - EX28DRAFT_0806 0.61 -0.3
807,227 + EX28DRAFT_0806 0.78 +1.4
807,228 - EX28DRAFT_0806 0.79 -0.4
807,228 - EX28DRAFT_0806 0.79 +0.1
807,376 - -0.3
807,380 + -1.0
807,434 + +0.3
807,449 + +0.7
807,459 - +0.5
807,497 + +0.1
807,535 + -2.2
807,535 + +0.3
807,536 - +1.0
807,539 + -0.1
807,539 + -0.3
807,588 + -0.9
807,588 + +0.5
807,589 - +0.1
807,759 - EX28DRAFT_0807 0.10 +2.4
808,373 + EX28DRAFT_0807 0.34 -0.2
808,683 + EX28DRAFT_0807 0.46 +0.7
808,684 - EX28DRAFT_0807 0.46 +0.6
808,684 - EX28DRAFT_0807 0.46 +0.7
808,684 - EX28DRAFT_0807 0.46 +0.4
808,903 - EX28DRAFT_0807 0.54 -0.6
809,306 + EX28DRAFT_0807 0.70 +0.1
809,307 - EX28DRAFT_0807 0.70 -0.3
809,464 + EX28DRAFT_0807 0.76 +0.1
809,464 + EX28DRAFT_0807 0.76 +0.5
809,465 - EX28DRAFT_0807 0.76 +0.0
809,465 - EX28DRAFT_0807 0.76 -0.1
809,465 - EX28DRAFT_0807 0.76 +0.9
809,645 + EX28DRAFT_0807 0.83 +1.1
809,799 + EX28DRAFT_0807 0.88 -0.1
809,800 - EX28DRAFT_0807 0.88 +1.2
809,888 + -0.4
809,889 - +0.0
810,014 - +1.3
810,014 - -0.7
810,102 + +0.4
810,121 - -1.2
810,140 + -0.8
810,287 + EX28DRAFT_0808 0.11 +4.1
810,469 - EX28DRAFT_0808 0.24 +0.8
810,469 - EX28DRAFT_0808 0.24 -0.6
810,469 - EX28DRAFT_0808 0.24 +0.3
810,469 - EX28DRAFT_0808 0.24 +0.5
810,486 + EX28DRAFT_0808 0.25 +0.1
810,606 + EX28DRAFT_0808 0.34 +0.3
810,759 + EX28DRAFT_0808 0.45 -0.1
810,805 - EX28DRAFT_0808 0.48 +0.6
810,919 - EX28DRAFT_0808 0.56 +1.2
811,009 + EX28DRAFT_0808 0.62 +0.5
811,009 + EX28DRAFT_0808 0.62 -0.1
811,009 + EX28DRAFT_0808 0.62 +0.1
811,009 + EX28DRAFT_0808 0.62 +0.6
811,010 - EX28DRAFT_0808 0.62 -1.3
811,010 - EX28DRAFT_0808 0.62 -0.2

Or see this region's nucleotide sequence