Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0796

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0794 and EX28DRAFT_0795 are separated by 54 nucleotidesEX28DRAFT_0795 and EX28DRAFT_0796 are separated by 50 nucleotidesEX28DRAFT_0796 and EX28DRAFT_0797 are separated by 179 nucleotidesEX28DRAFT_0797 and EX28DRAFT_0798 are separated by 57 nucleotides EX28DRAFT_0794: EX28DRAFT_0794 - type VI secretion protein, EvpB/VC_A0108 family, at 795,587 to 797,086 _0794 EX28DRAFT_0795: EX28DRAFT_0795 - hypothetical protein, at 797,141 to 797,374 _0795 EX28DRAFT_0796: EX28DRAFT_0796 - hypothetical protein, at 797,425 to 797,844 _0796 EX28DRAFT_0797: EX28DRAFT_0797 - Hemolysin-coregulated protein (uncharacterized), at 798,024 to 798,506 _0797 EX28DRAFT_0798: EX28DRAFT_0798 - hypothetical protein, at 798,564 to 799,106 _0798 Position (kb) 797 798Strain fitness (log2 ratio) -2 -1 0 1 2 3at 796.433 kb on + strand, within EX28DRAFT_0794at 796.633 kb on + strand, within EX28DRAFT_0794at 796.709 kb on + strand, within EX28DRAFT_0794at 796.877 kb on + strand, within EX28DRAFT_0794at 796.878 kb on - strand, within EX28DRAFT_0794at 796.980 kb on - strandat 797.054 kb on - strandat 797.094 kb on - strandat 797.115 kb on - strandat 797.135 kb on + strandat 797.136 kb on - strandat 797.195 kb on + strand, within EX28DRAFT_0795at 797.195 kb on + strand, within EX28DRAFT_0795at 797.197 kb on + strand, within EX28DRAFT_0795at 797.198 kb on - strand, within EX28DRAFT_0795at 797.198 kb on - strand, within EX28DRAFT_0795at 797.206 kb on - strand, within EX28DRAFT_0795at 797.208 kb on + strand, within EX28DRAFT_0795at 797.246 kb on + strand, within EX28DRAFT_0795at 797.247 kb on - strand, within EX28DRAFT_0795at 797.305 kb on - strand, within EX28DRAFT_0795at 797.318 kb on - strand, within EX28DRAFT_0795at 797.339 kb on + strand, within EX28DRAFT_0795at 797.340 kb on - strand, within EX28DRAFT_0795at 797.450 kb on + strandat 797.450 kb on + strandat 797.451 kb on - strandat 797.465 kb on - strandat 797.482 kb on - strand, within EX28DRAFT_0796at 797.485 kb on + strand, within EX28DRAFT_0796at 797.532 kb on + strand, within EX28DRAFT_0796at 797.562 kb on - strand, within EX28DRAFT_0796at 797.655 kb on + strand, within EX28DRAFT_0796at 797.656 kb on - strand, within EX28DRAFT_0796at 797.759 kb on - strand, within EX28DRAFT_0796at 797.759 kb on - strand, within EX28DRAFT_0796at 797.802 kb on - strand, within EX28DRAFT_0796at 797.842 kb on + strandat 797.884 kb on + strandat 797.933 kb on - strandat 797.933 kb on - strandat 797.974 kb on - strandat 797.975 kb on + strandat 797.975 kb on + strandat 797.996 kb on + strandat 798.017 kb on - strandat 798.020 kb on + strandat 798.021 kb on - strandat 798.024 kb on - strandat 798.035 kb on + strandat 798.102 kb on - strand, within EX28DRAFT_0797at 798.102 kb on - strand, within EX28DRAFT_0797at 798.104 kb on + strand, within EX28DRAFT_0797at 798.104 kb on + strand, within EX28DRAFT_0797at 798.105 kb on - strand, within EX28DRAFT_0797at 798.105 kb on - strand, within EX28DRAFT_0797at 798.105 kb on - strand, within EX28DRAFT_0797at 798.140 kb on + strand, within EX28DRAFT_0797at 798.141 kb on - strand, within EX28DRAFT_0797at 798.141 kb on - strand, within EX28DRAFT_0797at 798.309 kb on + strand, within EX28DRAFT_0797at 798.309 kb on + strand, within EX28DRAFT_0797at 798.310 kb on - strand, within EX28DRAFT_0797at 798.393 kb on + strand, within EX28DRAFT_0797at 798.393 kb on + strand, within EX28DRAFT_0797at 798.393 kb on + strand, within EX28DRAFT_0797at 798.394 kb on - strand, within EX28DRAFT_0797at 798.394 kb on - strand, within EX28DRAFT_0797at 798.394 kb on - strand, within EX28DRAFT_0797at 798.504 kb on + strandat 798.505 kb on - strandat 798.512 kb on + strandat 798.512 kb on + strandat 798.512 kb on + strandat 798.512 kb on + strandat 798.512 kb on + strandat 798.560 kb on + strandat 798.560 kb on + strandat 798.561 kb on - strandat 798.561 kb on - strandat 798.613 kb on + strandat 798.647 kb on - strand, within EX28DRAFT_0798at 798.674 kb on + strand, within EX28DRAFT_0798at 798.693 kb on - strand, within EX28DRAFT_0798at 798.695 kb on + strand, within EX28DRAFT_0798at 798.791 kb on + strand, within EX28DRAFT_0798at 798.791 kb on + strand, within EX28DRAFT_0798at 798.823 kb on + strand, within EX28DRAFT_0798at 798.823 kb on + strand, within EX28DRAFT_0798at 798.823 kb on + strand, within EX28DRAFT_0798at 798.824 kb on - strand, within EX28DRAFT_0798at 798.824 kb on - strand, within EX28DRAFT_0798

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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796,433 + EX28DRAFT_0794 0.56 -0.1
796,633 + EX28DRAFT_0794 0.70 +0.3
796,709 + EX28DRAFT_0794 0.75 +0.8
796,877 + EX28DRAFT_0794 0.86 -0.1
796,878 - EX28DRAFT_0794 0.86 +0.4
796,980 - -0.6
797,054 - -1.0
797,094 - -0.2
797,115 - +0.0
797,135 + -0.7
797,136 - +0.8
797,195 + EX28DRAFT_0795 0.23 -0.8
797,195 + EX28DRAFT_0795 0.23 -0.1
797,197 + EX28DRAFT_0795 0.24 -0.5
797,198 - EX28DRAFT_0795 0.24 -0.2
797,198 - EX28DRAFT_0795 0.24 -0.7
797,206 - EX28DRAFT_0795 0.28 +3.0
797,208 + EX28DRAFT_0795 0.29 +0.2
797,246 + EX28DRAFT_0795 0.45 +0.2
797,247 - EX28DRAFT_0795 0.45 +0.4
797,305 - EX28DRAFT_0795 0.70 +0.4
797,318 - EX28DRAFT_0795 0.76 +0.4
797,339 + EX28DRAFT_0795 0.85 +1.4
797,340 - EX28DRAFT_0795 0.85 -0.1
797,450 + +0.0
797,450 + -0.1
797,451 - -0.5
797,465 - -1.4
797,482 - EX28DRAFT_0796 0.14 -2.2
797,485 + EX28DRAFT_0796 0.14 +0.7
797,532 + EX28DRAFT_0796 0.25 +0.9
797,562 - EX28DRAFT_0796 0.33 +0.4
797,655 + EX28DRAFT_0796 0.55 +1.5
797,656 - EX28DRAFT_0796 0.55 -2.1
797,759 - EX28DRAFT_0796 0.80 -1.7
797,759 - EX28DRAFT_0796 0.80 -0.6
797,802 - EX28DRAFT_0796 0.90 -1.5
797,842 + -0.2
797,884 + -0.6
797,933 - -1.4
797,933 - -0.4
797,974 - +0.9
797,975 + +0.3
797,975 + +0.6
797,996 + -1.2
798,017 - +0.2
798,020 + +0.2
798,021 - -1.0
798,024 - +0.9
798,035 + -0.1
798,102 - EX28DRAFT_0797 0.16 -0.7
798,102 - EX28DRAFT_0797 0.16 -0.5
798,104 + EX28DRAFT_0797 0.17 +0.4
798,104 + EX28DRAFT_0797 0.17 +0.9
798,105 - EX28DRAFT_0797 0.17 +0.9
798,105 - EX28DRAFT_0797 0.17 -0.3
798,105 - EX28DRAFT_0797 0.17 -0.5
798,140 + EX28DRAFT_0797 0.24 +0.3
798,141 - EX28DRAFT_0797 0.24 -0.7
798,141 - EX28DRAFT_0797 0.24 +1.2
798,309 + EX28DRAFT_0797 0.59 +0.2
798,309 + EX28DRAFT_0797 0.59 +0.2
798,310 - EX28DRAFT_0797 0.59 +0.1
798,393 + EX28DRAFT_0797 0.76 -0.0
798,393 + EX28DRAFT_0797 0.76 -0.3
798,393 + EX28DRAFT_0797 0.76 -0.3
798,394 - EX28DRAFT_0797 0.77 -0.6
798,394 - EX28DRAFT_0797 0.77 -0.6
798,394 - EX28DRAFT_0797 0.77 -0.4
798,504 + -0.0
798,505 - -0.3
798,512 + -1.4
798,512 + +0.6
798,512 + +1.3
798,512 + +0.3
798,512 + -0.4
798,560 + +0.7
798,560 + -0.1
798,561 - -0.8
798,561 - -0.7
798,613 + +0.6
798,647 - EX28DRAFT_0798 0.15 -0.1
798,674 + EX28DRAFT_0798 0.20 -0.1
798,693 - EX28DRAFT_0798 0.24 +0.1
798,695 + EX28DRAFT_0798 0.24 -0.2
798,791 + EX28DRAFT_0798 0.42 +0.6
798,791 + EX28DRAFT_0798 0.42 -0.4
798,823 + EX28DRAFT_0798 0.48 -0.2
798,823 + EX28DRAFT_0798 0.48 -0.6
798,823 + EX28DRAFT_0798 0.48 -0.0
798,824 - EX28DRAFT_0798 0.48 -1.1
798,824 - EX28DRAFT_0798 0.48 +0.0

Or see this region's nucleotide sequence