Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0737 and EX28DRAFT_0738 overlap by 4 nucleotides EX28DRAFT_0738 and EX28DRAFT_0739 are separated by 398 nucleotides EX28DRAFT_0739 and EX28DRAFT_0740 are separated by 54 nucleotides EX28DRAFT_0740 and EX28DRAFT_0741 are separated by 12 nucleotides
EX28DRAFT_0737: EX28DRAFT_0737 - Methyltransferase domain, at 734,579 to 735,394
_0737
EX28DRAFT_0738: EX28DRAFT_0738 - Predicted membrane protein, at 735,391 to 735,957
_0738
EX28DRAFT_0739: EX28DRAFT_0739 - Predicted membrane protein, at 736,356 to 736,814
_0739
EX28DRAFT_0740: EX28DRAFT_0740 - PTS system, mannose/fructose/sorbose family, IID component, at 736,869 to 737,720
_0740
EX28DRAFT_0741: EX28DRAFT_0741 - PTS system, mannose/fructose/sorbose family, IIC component, at 737,733 to 738,533
_0741
Position (kb) 736
737 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 735.497 kb on - strand, within EX28DRAFT_0738 at 735.734 kb on - strand, within EX28DRAFT_0738 at 735.864 kb on + strand, within EX28DRAFT_0738 at 735.984 kb on + strand at 735.985 kb on - strand at 736.022 kb on + strand at 736.026 kb on + strand at 736.027 kb on - strand at 736.027 kb on - strand at 736.053 kb on + strand at 736.054 kb on - strand at 736.054 kb on - strand at 736.169 kb on - strand at 736.532 kb on + strand, within EX28DRAFT_0739 at 736.593 kb on + strand, within EX28DRAFT_0739 at 736.593 kb on + strand, within EX28DRAFT_0739 at 736.611 kb on + strand, within EX28DRAFT_0739 at 736.639 kb on + strand, within EX28DRAFT_0739 at 736.649 kb on + strand, within EX28DRAFT_0739 at 736.753 kb on + strand, within EX28DRAFT_0739 at 736.794 kb on + strand at 736.858 kb on - strand at 736.870 kb on + strand at 736.870 kb on + strand at 736.871 kb on - strand at 737.231 kb on - strand, within EX28DRAFT_0740 at 737.231 kb on - strand, within EX28DRAFT_0740 at 737.491 kb on + strand, within EX28DRAFT_0740 at 737.491 kb on + strand, within EX28DRAFT_0740 at 737.492 kb on - strand, within EX28DRAFT_0740 at 737.492 kb on - strand, within EX28DRAFT_0740 at 737.612 kb on + strand, within EX28DRAFT_0740 at 737.646 kb on - strand at 737.646 kb on - strand at 737.712 kb on - strand at 737.801 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 735,497 - EX28DRAFT_0738 0.19 -0.1 735,734 - EX28DRAFT_0738 0.60 +0.0 735,864 + EX28DRAFT_0738 0.83 -0.6 735,984 + -2.0 735,985 - +0.2 736,022 + -1.2 736,026 + -3.3 736,027 - +0.1 736,027 - -0.4 736,053 + -0.9 736,054 - -0.5 736,054 - +0.6 736,169 - +0.9 736,532 + EX28DRAFT_0739 0.38 -0.5 736,593 + EX28DRAFT_0739 0.52 -0.4 736,593 + EX28DRAFT_0739 0.52 +0.4 736,611 + EX28DRAFT_0739 0.56 +0.2 736,639 + EX28DRAFT_0739 0.62 -1.4 736,649 + EX28DRAFT_0739 0.64 -0.9 736,753 + EX28DRAFT_0739 0.86 -0.0 736,794 + -0.3 736,858 - -0.3 736,870 + -0.1 736,870 + -0.1 736,871 - +1.5 737,231 - EX28DRAFT_0740 0.42 +1.1 737,231 - EX28DRAFT_0740 0.42 -0.8 737,491 + EX28DRAFT_0740 0.73 +2.6 737,491 + EX28DRAFT_0740 0.73 -0.2 737,492 - EX28DRAFT_0740 0.73 +0.7 737,492 - EX28DRAFT_0740 0.73 -0.7 737,612 + EX28DRAFT_0740 0.87 -0.7 737,646 - -1.3 737,646 - -0.4 737,712 - +1.5 737,801 - -0.4
Or see this region's nucleotide sequence