Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0696 and EX28DRAFT_0697 are separated by 59 nucleotides EX28DRAFT_0697 and EX28DRAFT_0698 overlap by 4 nucleotides EX28DRAFT_0698 and EX28DRAFT_0699 are separated by 62 nucleotides
EX28DRAFT_0696: EX28DRAFT_0696 - Holliday junction DNA helicase subunit RuvB, at 692,986 to 693,996
_0696
EX28DRAFT_0697: EX28DRAFT_0697 - ABC-type Mn2+/Zn2+ transport systems, permease components, at 694,056 to 694,841
_0697
EX28DRAFT_0698: EX28DRAFT_0698 - ABC-type Mn/Zn transport systems, ATPase component, at 694,838 to 695,593
_0698
EX28DRAFT_0699: EX28DRAFT_0699 - ABC-type Zn2+ transport system, periplasmic component/surface adhesin, at 695,656 to 696,615
_0699
Position (kb) 694
695 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 693.741 kb on + strand, within EX28DRAFT_0696 at 693.994 kb on + strand at 694.079 kb on + strand at 694.079 kb on + strand at 694.501 kb on + strand, within EX28DRAFT_0697 at 694.577 kb on + strand, within EX28DRAFT_0697 at 694.670 kb on - strand, within EX28DRAFT_0697 at 694.803 kb on - strand at 694.803 kb on - strand at 694.912 kb on - strand at 694.912 kb on - strand at 694.955 kb on - strand, within EX28DRAFT_0698 at 695.003 kb on - strand, within EX28DRAFT_0698 at 695.003 kb on - strand, within EX28DRAFT_0698 at 695.042 kb on + strand, within EX28DRAFT_0698 at 695.096 kb on + strand, within EX28DRAFT_0698 at 695.096 kb on + strand, within EX28DRAFT_0698 at 695.096 kb on + strand, within EX28DRAFT_0698 at 695.116 kb on - strand, within EX28DRAFT_0698 at 695.204 kb on + strand, within EX28DRAFT_0698 at 695.204 kb on + strand, within EX28DRAFT_0698 at 695.204 kb on + strand, within EX28DRAFT_0698 at 695.204 kb on + strand, within EX28DRAFT_0698 at 695.410 kb on + strand, within EX28DRAFT_0698 at 695.628 kb on + strand at 695.629 kb on - strand at 695.629 kb on - strand at 695.675 kb on + strand at 695.724 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 693,741 + EX28DRAFT_0696 0.75 +1.6 693,994 + +0.4 694,079 + +1.6 694,079 + -0.7 694,501 + EX28DRAFT_0697 0.57 -1.4 694,577 + EX28DRAFT_0697 0.66 -1.1 694,670 - EX28DRAFT_0697 0.78 -2.1 694,803 - +0.2 694,803 - -3.3 694,912 - -0.9 694,912 - -0.2 694,955 - EX28DRAFT_0698 0.15 +0.6 695,003 - EX28DRAFT_0698 0.22 +0.3 695,003 - EX28DRAFT_0698 0.22 -1.5 695,042 + EX28DRAFT_0698 0.27 -0.2 695,096 + EX28DRAFT_0698 0.34 -0.2 695,096 + EX28DRAFT_0698 0.34 -1.9 695,096 + EX28DRAFT_0698 0.34 -1.1 695,116 - EX28DRAFT_0698 0.37 +0.2 695,204 + EX28DRAFT_0698 0.48 -1.5 695,204 + EX28DRAFT_0698 0.48 +1.0 695,204 + EX28DRAFT_0698 0.48 -0.1 695,204 + EX28DRAFT_0698 0.48 -0.4 695,410 + EX28DRAFT_0698 0.76 -1.0 695,628 + -1.5 695,629 - -1.1 695,629 - +0.4 695,675 + -1.5 695,724 + +0.2
Or see this region's nucleotide sequence