Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0593 and EX28DRAFT_0594 overlap by 20 nucleotides EX28DRAFT_0594 and EX28DRAFT_0595 overlap by 29 nucleotides EX28DRAFT_0595 and EX28DRAFT_0596 are separated by 178 nucleotides
EX28DRAFT_0593: EX28DRAFT_0593 - DNA-methyltransferase (dcm), at 596,266 to 597,681
_0593
EX28DRAFT_0594: EX28DRAFT_0594 - T/G mismatch-specific endonuclease (EC 3.1.-.-), at 597,662 to 598,153
_0594
EX28DRAFT_0595: EX28DRAFT_0595 - Predicted permease, DMT superfamily, at 598,125 to 599,039
_0595
EX28DRAFT_0596: EX28DRAFT_0596 - Uncharacterized protein conserved in bacteria, at 599,218 to 600,129
_0596
Position (kb) 598
599
600 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 597.253 kb on + strand, within EX28DRAFT_0593 at 597.254 kb on - strand, within EX28DRAFT_0593 at 597.315 kb on - strand, within EX28DRAFT_0593 at 597.361 kb on + strand, within EX28DRAFT_0593 at 597.364 kb on + strand, within EX28DRAFT_0593 at 597.364 kb on + strand, within EX28DRAFT_0593 at 597.365 kb on - strand, within EX28DRAFT_0593 at 597.366 kb on + strand, within EX28DRAFT_0593 at 597.700 kb on + strand at 597.701 kb on - strand at 597.889 kb on + strand, within EX28DRAFT_0594 at 598.127 kb on - strand at 598.173 kb on + strand at 598.178 kb on - strand at 598.301 kb on - strand, within EX28DRAFT_0595 at 598.349 kb on + strand, within EX28DRAFT_0595 at 598.349 kb on + strand, within EX28DRAFT_0595 at 598.350 kb on - strand, within EX28DRAFT_0595 at 598.350 kb on - strand, within EX28DRAFT_0595 at 598.351 kb on + strand, within EX28DRAFT_0595 at 598.859 kb on + strand, within EX28DRAFT_0595 at 598.859 kb on + strand, within EX28DRAFT_0595 at 598.859 kb on + strand, within EX28DRAFT_0595 at 598.859 kb on + strand, within EX28DRAFT_0595 at 598.859 kb on + strand, within EX28DRAFT_0595 at 598.860 kb on - strand, within EX28DRAFT_0595 at 598.860 kb on - strand, within EX28DRAFT_0595 at 598.860 kb on - strand, within EX28DRAFT_0595 at 598.860 kb on - strand, within EX28DRAFT_0595 at 598.860 kb on - strand, within EX28DRAFT_0595 at 598.969 kb on + strand at 598.969 kb on + strand at 598.970 kb on - strand at 598.990 kb on + strand at 598.990 kb on + strand at 598.991 kb on - strand at 598.991 kb on - strand at 598.991 kb on - strand at 598.991 kb on - strand at 599.075 kb on + strand at 599.108 kb on + strand at 599.109 kb on - strand at 599.178 kb on + strand at 599.178 kb on + strand at 599.182 kb on - strand at 599.182 kb on - strand at 599.190 kb on - strand at 599.229 kb on + strand at 599.229 kb on + strand at 599.230 kb on - strand at 599.234 kb on + strand at 599.234 kb on + strand at 599.234 kb on + strand at 599.234 kb on + strand at 599.235 kb on - strand at 599.333 kb on + strand, within EX28DRAFT_0596 at 599.334 kb on - strand, within EX28DRAFT_0596 at 599.421 kb on + strand, within EX28DRAFT_0596 at 599.422 kb on - strand, within EX28DRAFT_0596 at 599.525 kb on + strand, within EX28DRAFT_0596 at 599.526 kb on - strand, within EX28DRAFT_0596 at 599.568 kb on + strand, within EX28DRAFT_0596 at 599.568 kb on + strand, within EX28DRAFT_0596 at 599.569 kb on - strand, within EX28DRAFT_0596 at 599.780 kb on - strand, within EX28DRAFT_0596
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 597,253 + EX28DRAFT_0593 0.70 +0.3 597,254 - EX28DRAFT_0593 0.70 +0.1 597,315 - EX28DRAFT_0593 0.74 -0.4 597,361 + EX28DRAFT_0593 0.77 +3.3 597,364 + EX28DRAFT_0593 0.78 -0.1 597,364 + EX28DRAFT_0593 0.78 +0.4 597,365 - EX28DRAFT_0593 0.78 -0.4 597,366 + EX28DRAFT_0593 0.78 +0.2 597,700 + -0.5 597,701 - +0.2 597,889 + EX28DRAFT_0594 0.46 -0.4 598,127 - +0.7 598,173 + +0.0 598,178 - -0.1 598,301 - EX28DRAFT_0595 0.19 +0.1 598,349 + EX28DRAFT_0595 0.24 +0.1 598,349 + EX28DRAFT_0595 0.24 +4.3 598,350 - EX28DRAFT_0595 0.25 -0.2 598,350 - EX28DRAFT_0595 0.25 +0.0 598,351 + EX28DRAFT_0595 0.25 +1.3 598,859 + EX28DRAFT_0595 0.80 +0.2 598,859 + EX28DRAFT_0595 0.80 +1.5 598,859 + EX28DRAFT_0595 0.80 -0.5 598,859 + EX28DRAFT_0595 0.80 +0.3 598,859 + EX28DRAFT_0595 0.80 +0.5 598,860 - EX28DRAFT_0595 0.80 +0.1 598,860 - EX28DRAFT_0595 0.80 -0.7 598,860 - EX28DRAFT_0595 0.80 -0.4 598,860 - EX28DRAFT_0595 0.80 +0.6 598,860 - EX28DRAFT_0595 0.80 -0.1 598,969 + +0.6 598,969 + +0.3 598,970 - +1.1 598,990 + +0.0 598,990 + -0.1 598,991 - +0.3 598,991 - -0.4 598,991 - -1.6 598,991 - +0.1 599,075 + -0.2 599,108 + +2.7 599,109 - +0.0 599,178 + +0.2 599,178 + -0.5 599,182 - -0.3 599,182 - +0.1 599,190 - -0.4 599,229 + -0.7 599,229 + -0.0 599,230 - +0.4 599,234 + +0.2 599,234 + +0.7 599,234 + +1.3 599,234 + -0.6 599,235 - -0.1 599,333 + EX28DRAFT_0596 0.13 -0.5 599,334 - EX28DRAFT_0596 0.13 -0.7 599,421 + EX28DRAFT_0596 0.22 -0.3 599,422 - EX28DRAFT_0596 0.22 +1.0 599,525 + EX28DRAFT_0596 0.34 +0.1 599,526 - EX28DRAFT_0596 0.34 -0.0 599,568 + EX28DRAFT_0596 0.38 -0.2 599,568 + EX28DRAFT_0596 0.38 -1.1 599,569 - EX28DRAFT_0596 0.38 +0.0 599,780 - EX28DRAFT_0596 0.62 -0.2
Or see this region's nucleotide sequence